RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SEPHS1P49903 392 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 INHBCP55103 352 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 PRDX1Q06830 199 aaKnown RBP20.42■□□□□ 0.86
VPS29-206ENST00000549578 MPP2Q14168 576 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 ZYG11AQ6WRX3 759 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 PRSS42Q7Z5A4 293 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 KLHDC8AQ8IYD2 350 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 C1GALT1Q9NS00 363 aa20.42■□□□□ 0.86
VPS29-206ENST00000549578 PRPF4O43172 522 aaKnown RBP eCLIP20.41■□□□□ 0.86
VPS29-206ENST00000549578 PRAMEF10O60809 474 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 CSO75390 466 aaKnown RBP20.41■□□□□ 0.86
VPS29-206ENST00000549578 CPA3P15088 417 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 MAGP20916 626 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 EEF1DP29692 281 aaKnown RBP20.41■□□□□ 0.86
VPS29-206ENST00000549578 CMPK1P30085 196 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 ID4P47928 161 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 NFKB2Q00653 900 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 ISXQ2M1V0 245 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 LCTLQ6UWM7 567 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 RDH11Q8TC12 318 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 TMEM74Q96NL1 305 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 DEPDC7Q96QD5 511 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 PCBD2Q9H0N5 130 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 SLC6A20Q9NP91 592 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 MRPS30Q9NP92 439 aaKnown RBP20.41■□□□□ 0.86
VPS29-206ENST00000549578 CUEDC1Q9NWM3 386 aaPredicted RBP20.41■□□□□ 0.86
VPS29-206ENST00000549578 COPG2Q9UBF2 871 aa20.41■□□□□ 0.86
VPS29-206ENST00000549578 IGKV1-8A0A0C4DH67 115 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 FAM149AA5PLN7 773 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 STX16-NPEPL1H3BU86 382 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 STX16O14662 325 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 LRRC70Q7Z2Q7 622 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 ARHGAP22Q7Z5H3 698 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 CHCHD4Q8N4Q1 142 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 DCBLD1Q8N8Z6 715 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 SNX31Q8N9S9 440 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 TRAPPC9Q96Q05 1148 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 HAUS8Q9BT25 410 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 ZNF768Q9H5H4 540 aaKnown RBP20.4■□□□□ 0.86
VPS29-206ENST00000549578 ACSS2Q9NR19 701 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 DNAJC11Q9NVH1 559 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 SEMA5BQ9P283 1151 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 OPTCQ9UBM4 332 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 TNPO3Q9Y5L0 923 aaKnown RBP20.4■□□□□ 0.86
VPS29-206ENST00000549578 SPTBN2O15020 2390 aa20.4■□□□□ 0.86
VPS29-206ENST00000549578 TMEM120BA0PK00 339 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 HMGB1P1B2RPK0 211 aaPredicted RBP20.39■□□□□ 0.85
VPS29-206ENST00000549578 K7EPI3 171 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 NRP2O60462 931 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 CCNDBP1O95273 360 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 CCKBRP32239 447 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 GRIA3P42263 894 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 ETV4P43268 484 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 TRA2AQ13595 282 aaKnown RBP eCLIP20.39■□□□□ 0.85
VPS29-206ENST00000549578 C16orf72Q14CZ0 275 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 PCLAFQ15004 111 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 PCBP2Q15366 365 aaKnown RBP eCLIP20.39■□□□□ 0.85
VPS29-206ENST00000549578 ZIC1Q15915 447 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 PDK4Q16654 411 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 RAB44Q7Z6P3 723 aaPredicted RBP20.39■□□□□ 0.85
VPS29-206ENST00000549578 C17orf64Q86WR6 236 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 MARCH9Q86YJ5 346 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 ANKRD42Q8N9B4 389 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 NEIL2Q969S2 332 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 MOCOSQ96EN8 888 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 PKNOX2Q96KN3 472 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 TMEM237Q96Q45 408 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 SELENOSQ9BQE4 189 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 DPH7Q9BTV6 452 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 MID2Q9UJV3 735 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 DYRK1BQ9Y463 629 aa20.39■□□□□ 0.85
VPS29-206ENST00000549578 E2F3O00716 465 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 TM9SF1O15321 606 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 TOX3O15405 576 aaPredicted RBP20.38■□□□□ 0.85
VPS29-206ENST00000549578 ATP8B1O43520 1251 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 ZBTB11O95625 1053 aaPredicted RBP20.38■□□□□ 0.85
VPS29-206ENST00000549578 ANKRD34CP0C6C1 535 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 CDH1P12830 882 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 JUPP14923 745 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 HPDP32754 393 aaPredicted RBP20.38■□□□□ 0.85
VPS29-206ENST00000549578 PRKAA2P54646 552 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 ABATP80404 500 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 CDC16Q13042 620 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 RPS27LQ71UM5 84 aaKnown RBP20.38■□□□□ 0.85
VPS29-206ENST00000549578 TMPRSS12Q86WS5 348 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 SLC22A9Q8IVM8 553 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 C10orf107Q8IVU9 208 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 CARFQ8N187 725 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 TEX9Q8N6V9 391 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 C19orf47Q8N9M1 422 aaKnown RBP20.38■□□□□ 0.85
VPS29-206ENST00000549578 SLC5A11Q8WWX8 675 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 KLHL6Q8WZ60 621 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 MECRQ9BV79 373 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 MLXIPLQ9NP71 852 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 SOHLH2Q9NX45 425 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 KCNE2Q9Y6J6 123 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 PTPRBP23467 1997 aa20.38■□□□□ 0.85
VPS29-206ENST00000549578 E7EQ34 232 aa20.37■□□□□ 0.85
VPS29-206ENST00000549578 H7BY64 318 aa20.37■□□□□ 0.85
VPS29-206ENST00000549578 ZWINTO95229 277 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms