RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NDUFA5Q16718 116 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SLC25A52Q3SY17 297 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 FAM174BQ3ZCQ3 159 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 INO80DQ53TQ3 878 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 PIGGQ5H8A4 983 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SYCE2Q6PIF2 218 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 GLT6D1Q7Z4J2 308 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ZC3HC1Q86WB0 502 aaKnown RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 RAB43Q86YS6 212 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ARMC8Q8IUR7 673 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 BBS7Q8IWZ6 715 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 HS3ST5Q8IZT8 346 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ACVR1CQ8NER5 493 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 FEM1CQ96JP0 617 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 COG8Q96MW5 612 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 DEFB118Q96PH6 123 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 MYOCQ99972 504 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 RC3H2Q9HBD1 1191 aaKnown RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SMPD4Q9NXE4 827 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 TMCC3Q9ULS5 477 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 KMT2EQ8IZD2 1858 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 MYO9BQ13459 2157 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CACNA1CQ13936 2221 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 FAM240BA0A1B0GVZ2 78 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 OR6C70A6NIJ9 312 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SDHDO14521 159 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF195O14628 629 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 MDM4O15151 490 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 MAFO75444 373 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 AP2A2O94973 939 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 INMTO95050 263 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 GPIP06744 558 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CDH1P12830 882 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CYP3A5P20815 502 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CHI3L1P36222 383 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ALDH9A1P49189 494 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 HARS2P49590 506 aaKnown RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CLCN5P51795 746 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ACLYP53396 1101 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 HMGCS1Q01581 520 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CREB5Q02930 508 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SMARCB1Q12824 385 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 C1DQ13901 141 aaKnown RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 QPRTQ15274 297 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 NCBP2-AS2Q69YL0 99 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 DUS1LQ6P1R4 473 aaKnown RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 PGM2L1Q6PCE3 622 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 LYPD4Q6UWN0 246 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 IGFN1Q86VF2 1251 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CMTR2Q8IYT2 770 aaKnown RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 DTWD2Q8NBA8 298 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 RCBTB1Q8NDN9 531 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 GPR156Q8NFN8 814 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ABHD11Q8NFV4 315 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 RNF141Q8WVD5 230 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 STON2Q8WXE9 905 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 NCSTNQ92542 709 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 BIRC7Q96CA5 298 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 C1GALT1C1Q96EU7 318 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 AURKBQ96GD4 344 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 DIRAS2Q96HU8 199 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 FCRL2Q96LA5 508 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SENP8Q96LD8 212 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 PANX1Q96RD7 426 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SORT1Q99523 831 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 MINDY3Q9H8M7 445 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 GLOD4Q9HC38 313 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 TIGARQ9NQ88 270 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 SNTG1Q9NSN8 517 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CATSPERZQ9NTU4 200 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF224Q9NZL3 707 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 CBLCQ9ULV8 474 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 NME7Q9Y5B8 376 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 PTPRDP23468 1912 aa5.35□□□□□ -1.55
LIMA1-203ENST00000547825 MBLAC1A4D2B0 266 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 YJEFN3A6XGL0 299 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 IFRD1O00458 451 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 AQP7O14520 342 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 RFXANKO14593 260 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 CD3EAPO15446 510 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 EIF4EBP3O60516 100 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 FARP2O94887 1054 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 MMP3P08254 477 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TGFB3P10600 412 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 IL4RP24394 825 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 RPS7P62081 194 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 YBX1P67809 324 aaKnown RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TUBA4AP68366 448 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 DSC2Q02487 901 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KCNAB2Q13303 367 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TOP3AQ13472 1001 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 GRB7Q14451 532 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 KYAT1Q16773 422 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 LRIT3Q3SXY7 679 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 STXBP5Q5T5C0 1151 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 MFSD14CQ5VZR4 134 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 TIGD7Q6NT04 549 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-203ENST00000547825 ZDHHC17Q8IUH5 632 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 CFAP52Q8N1V2 620 aa5.34□□□□□ -1.55
LIMA1-203ENST00000547825 GHDCQ8N2G8 530 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms