RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IL20RAQ9UHF4 553 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 LIPGQ9Y5X9 500 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 PRDM15P57071 1507 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 TRAV20A0A0B4J274 112 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 PIP5K1BO14986 540 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 UGT1A9O60656 530 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SULT1A3P0DMM9 295 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SULT1A4P0DMN0 295 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 RYKP34925 604 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 MMP14P50281 582 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 NEK3P51956 506 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CTBP2P56545 445 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 OR12D2P58182 307 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF543Q08ER8 600 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 PCK2Q16822 640 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 AKAP4Q5JQC9 854 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 HES3Q5TGS1 186 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF730Q6ZMV8 503 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 ABHD12BQ7Z5M8 362 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 LHFPL4Q7Z7J7 247 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 BEST4Q8NFU0 473 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 CDK15Q96Q40 435 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 FEM1AQ9BSK4 669 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 RNF26Q9BY78 433 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 UGT1A7Q9HAW7 530 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 UGT1A10Q9HAW8 530 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 UGT1A8Q9HAW9 530 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 SCML2Q9UQR0 700 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 COX11Q9Y6N1 276 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 WASF2Q9Y6W5 498 aa7.48□□□□□ -1.21
LIMCH1-201ENST00000313860 EIF4G3O43432 1585 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PRAG1Q86YV5 1406 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 H3BMQ9 156 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 H3BUI4 141 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 HSPB6O14558 160 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 HKR1P10072 659 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 MLLT3P42568 568 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 EPHA5P54756 1037 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 H3F3AP84243 136 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 MAT1AQ00266 395 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CRYZQ08257 329 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TMPRSS11FQ6ZWK6 438 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 USP30Q70CQ3 517 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ECHDC2Q86YB7 292 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 OR2T27Q8NH04 317 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 JPH3Q8WXH2 748 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 LINC01599Q8WXQ3 324 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 KAT5Q92993 513 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF512BQ96KM6 892 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ROPN1BQ9BZX4 212 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 MTFR1LQ9H019 292 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 KCNJ16Q9NPI9 418 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 POLE4Q9NR33 117 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM217BQ9NTX9 383 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDHB2Q9Y5E7 798 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 KRBOX1C9JBD0 128 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF195O14628 629 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 XRCC3O43542 346 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TLL1O43897 1013 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ITGA10O75578 1167 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CBX6O95503 412 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 THBS1P07996 1170 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 GJA4P35212 333 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NAA10P41227 235 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NRIP1P48552 1158 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NKX2-5P52952 324 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ACY1Q03154 408 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PLA2G4FQ68DD2 849 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 C14orf80Q86SX3 495 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SPATA2LQ8IUW3 424 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 DTX3Q8N9I9 347 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 OR6J1Q8NGC5 347 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC7A14Q8TBB6 771 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NT5C3BQ969T7 300 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PARK7Q99497 189 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ELP3Q9H9T3 547 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CPNE5Q9HCH3 593 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ARL8BQ9NVJ2 186 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 V9GYS6 101 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 BTBD17A6NE02 478 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDH17O14917 1159 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 KCNQ2O43526 872 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 RNF224P0DH78 156 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ACAA2P42765 397 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SNU13P55769 128 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 MTMR1Q13613 665 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 IL27RAQ6UWB1 636 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TMPRSS6Q8IU80 811 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 JAGN1Q8N5M9 183 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NECAP1Q8NC96 275 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 KIAA0895Q8NCT3 520 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 OR6K3Q8NGY3 331 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 RXFP2Q8WXD0 754 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 APOPT1Q96IL0 206 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NUSAP1Q9BXS6 441 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PAQR5Q9NXK6 330 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TAS2R9Q9NYW1 312 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF835Q9Y2P0 537 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 GRIN2DO15399 1336 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms