RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 OTUB1Q96FW1 271 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 SLITRK1Q96PX8 696 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 ACOX2Q99424 681 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 SLX1AQ9BQ83 275 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 FAM110AQ9BQ89 295 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 THAP7Q9BT49 309 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 TRIM6Q9C030 488 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 KLC2Q9H0B6 622 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 ISCUQ9H1K1 167 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 RNPEPL1Q9HAU8 725 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 SOHLH2Q9NX45 425 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 ASIC5Q9NY37 505 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 SPG21Q9NZD8 308 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 HMG20BQ9P0W2 317 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 PLEKHB1Q9UF11 243 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 NAP1L2Q9ULW6 460 aaPredicted RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 ZFR2Q9UPR6 939 aaKnown RBP5.62□□□□□ -1.51
VPS53-219ENST00000576019 ERVK-11Q9UQG0 969 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 KIF3AQ9Y496 699 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 NID2Q14112 1375 aa5.62□□□□□ -1.51
VPS53-219ENST00000576019 ATRQ13535 2644 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 CYP2D7A0A087X1C5 515 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 ELOVL7A1L3X0 281 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 ETV2O00321 342 aaPredicted RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 PPP6CO00743 305 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 ASTN1O14525 1302 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 RASGRF2O14827 1237 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 SMAD9O15198 467 aaKnown RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 PRAMEF11O60813 436 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MOSPD3O75425 235 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 PRDM1O75626 825 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 SPDEFO95238 335 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 NFATC1O95644 943 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 SNAI1O95863 264 aaPredicted RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 GH2P01242 217 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 C8orf89P0DMQ9 161 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 HIVEP1P15822 2718 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 HOXB8P17481 243 aaPredicted RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 NMBRP28336 390 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 GABRA5P31644 462 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MAGEA4P43358 317 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MAGEA9P43362 315 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 GCNT1Q02742 428 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 FRMPD4Q14CM0 1322 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 TRADDQ15628 312 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 SOWAHAQ2M3V2 549 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 PODNL1Q6PEZ8 512 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 RBM43Q6ZSC3 357 aaKnown RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 PLEKHM3Q6ZWE6 761 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 CBLL1Q75N03 491 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 DENND4AQ7Z401 1863 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MYOCDQ8IZQ8 938 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 TP53I13Q8NBR0 393 aaPredicted RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 WDR20Q8TBZ3 569 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 FAM216AQ8WUB2 273 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 PIGKQ92643 395 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 KAT2AQ92830 837 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 RAB7BQ96AH8 199 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 RNF183Q96D59 192 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 SAMD8Q96LT4 415 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 ZNF560Q96MR9 790 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MUS81Q96NY9 551 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MS4A10Q96PG2 267 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 KLHL5Q96PQ7 755 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 CDCA3Q99618 268 aaPredicted RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 PKP2Q99959 881 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 MACROD1Q9BQ69 325 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 GTPBP2Q9BX10 602 aaKnown RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 IDI2Q9BXS1 227 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 NT5C3AQ9H0P0 336 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 SRD5A3Q9H8P0 318 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 ACTR5Q9H9F9 607 aaPredicted RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 LMAN1LQ9HAT1 526 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 NGBQ9NPG2 151 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS53-219ENST00000576019 TRMT6Q9UJA5 497 aaKnown RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 CNOT6Q9ULM6 557 aaKnown RBP5.61□□□□□ -1.51
VPS53-219ENST00000576019 KCTD3Q9Y597 815 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 CENPEQ02224 2701 aa5.61□□□□□ -1.51
VPS53-219ENST00000576019 TRIP12Q14669 1992 aaPredicted RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 MROH7-TTC4A0A0A0MT08 1334 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 GAGE12BA1L429 117 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 GAGE12HA6NDE8 117 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 GPR89AB7ZAQ6 455 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 H0YCG3 227 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 FOXS1O43638 330 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 FAM20BO75063 409 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 CRCPO75575 148 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 PALMO75781 387 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 TMCC1O94876 653 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 LUC7L3O95232 432 aaKnown RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 MT-CO3P00414 261 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 GPR89BP0CG08 455 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 PRG2P13727 222 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 ST6GAL1P15907 406 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 NDUFB7P17568 137 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 EEF1B2P24534 225 aaKnown RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 ADSSP30520 456 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 TIA1P31483 386 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS53-219ENST00000576019 FRKP42685 505 aaPredicted RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms