RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 IRX1P78414 480 aaPredicted RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 CEBPZQ03701 1054 aaKnown RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 RUNX1T1Q06455 604 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 LRMPQ12912 555 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 CHAF1BQ13112 559 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 PNLIPRP3Q17RR3 467 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 PCGF3Q3KNV8 242 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 SBK1Q52WX2 424 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 TMEM35AQ53FP2 167 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 KRTCAP3Q53RY4 240 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ODF2Q5BJF6 829 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ZNF805Q5CZA5 627 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 PMS2CLQ68D20 193 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 CAVIN1Q6NZI2 390 aaKnown RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 PLEKHM3Q6ZWE6 761 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 TRMT1LQ7Z2T5 733 aaKnown RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 SLC9B2Q86UD5 537 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 GALNT13Q8IUC8 556 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ZNF713Q8N859 430 aaPredicted RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 ACVR1CQ8NER5 493 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 DMBX1Q8NFW5 382 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 OR13A1Q8NGR1 328 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 OR1J2Q8NGS2 313 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 SLC38A5Q8WUX1 472 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 PERPQ96FX8 193 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ERO1AQ96HE7 468 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ABHD8Q96I13 439 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 TSPAN18Q96SJ8 248 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ZNF334Q9HCZ1 680 aaPredicted RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 EIF2B3Q9NR50 452 aaKnown RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 ODF2LQ9ULJ1 636 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 PYCARDQ9ULZ3 195 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 TCF19Q9Y242 345 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 RRP15Q9Y3B9 282 aaKnown RBP3.3□□□□□ -1.88
USP48-215ENST00000534705 SNX8Q9Y5X2 465 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ZHX2Q9Y6X8 837 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 ATG2AQ2TAZ0 1938 aa3.3□□□□□ -1.88
USP48-215ENST00000534705 MYO9BQ13459 2157 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 SCN10AQ9Y5Y9 1956 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PLIN4Q96Q06 1357 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MYH15Q9Y2K3 1946 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 TANC1Q9C0D5 1861 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 IGKV6D-41A0A0C4DH26 115 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 A0A0D9SFI3 127 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ERI2A8K979 691 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 PDHXO00330 501 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 GPAA1O43292 621 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 DOK2O60496 412 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 CNMDO75829 334 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PDE9AO76083 593 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 HSPA4LO95757 839 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MLYCDO95822 493 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 IGHV4-39P01824 125 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ASNSP08243 561 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ACTN1P12814 892 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PAX1P15863 534 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MUTP22033 750 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 HOXC13P31276 330 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 HOXD13P35453 343 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ACTN2P35609 894 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 AHRP35869 848 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ATP6V1E1P36543 226 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MRPL12P52815 198 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 HMGCS2P54868 508 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 BACE1P56817 501 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 SP3Q02447 781 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 SPP2Q13103 211 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MAMLD1Q13495 774 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 SCARB2Q14108 478 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PDIA5Q14554 519 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 RASA2Q15283 850 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ZSCAN26Q16670 478 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 C12orf60Q5U649 245 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 GLDNQ6ZMI3 551 aaPredicted RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 Q75L30 129 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MARK2Q7KZI7 788 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 GALNTL5Q7Z4T8 443 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PXKQ7Z7A4 578 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 CPLX4Q7Z7G2 160 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PRPF39Q86UA1 669 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 LCA5Q86VQ0 697 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 IQCA1Q86XH1 822 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 CEP57L1Q8IYX8 460 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 SLC38A9Q8NBW4 561 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 CD99L2Q8TCZ2 262 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 ACER1Q8TDN7 264 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 POMGNT1Q8WZA1 660 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 DYNLL2Q96FJ2 89 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 CCDC34Q96HJ3 373 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 C12orf42Q96LP6 360 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 PCYT2Q99447 389 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 TRMT61BQ9BVS5 477 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 CRNKL1Q9BZJ0 848 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 TSPY26PQ9H489 355 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MTRRQ9UBK8 725 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 CNOT8Q9UFF9 292 aaKnown RBP3.29□□□□□ -1.88
USP48-215ENST00000534705 AGTPBP1Q9UPW5 1226 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 MTMR6Q9Y217 621 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 KLHL20Q9Y2M5 609 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms