RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 LARP4Q71RC2 724 aaKnown RBP eCLIP17.94■□□□□ 0.46
SMPD1-208ENST00000533123 CDYL2Q8N8U2 506 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 OR5AR1Q8NGP9 310 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 MCOLN3Q8TDD5 553 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 CMTM5Q96DZ9 223 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 HIST1H2AHQ96KK5 128 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 ZNF382Q96SR6 550 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 HIST1H2AJQ99878 128 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 H2AFJQ9BTM1 129 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 GSDMCQ9BYG8 508 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 TRIM54Q9BYV2 358 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 AKTIPQ9H8T0 292 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 RDH14Q9HBH5 336 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 IMP3Q9NV31 184 aaKnown RBP17.94■□□□□ 0.46
SMPD1-208ENST00000533123 SUSD2Q9UGT4 822 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 SNX11Q9Y5W9 270 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 CPOXP36551 454 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 NAA20P61599 178 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 SCIMPQ6UWF3 145 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 TAF8Q7Z7C8 310 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 FAM13CQ8NE31 585 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 CD244Q9BZW8 370 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 FSCN3Q9NQT6 498 aa17.94■□□□□ 0.46
SMPD1-208ENST00000533123 TP53BP1Q12888 1972 aaPredicted RBP17.93■□□□□ 0.46
SMPD1-208ENST00000533123 TRBV23OR9-2A0A075B6M9 112 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 ENO2P09104 434 aaPredicted RBP17.93■□□□□ 0.46
SMPD1-208ENST00000533123 MAPK9P45984 424 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 SLC25A3Q00325 362 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 BNC1Q01954 994 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 PRKG2Q13237 762 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 ZXDCQ2QGD7 858 aaPredicted RBP17.93■□□□□ 0.46
SMPD1-208ENST00000533123 SNX32Q86XE0 403 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 SNX31Q8N9S9 440 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 MCUR1Q96AQ8 359 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 IPPKQ9H8X2 491 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 TAAR2Q9P1P5 351 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 POLG2Q9UHN1 485 aa17.93■□□□□ 0.46
SMPD1-208ENST00000533123 GIPC1O14908 333 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 UBDO15205 165 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 SDC3O75056 442 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 KATNA1O75449 491 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 RPSAP08865 295 aaKnown RBP17.92■□□□□ 0.46
SMPD1-208ENST00000533123 CTSKP43235 329 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 CLNS1AP54105 237 aaKnown RBP17.92■□□□□ 0.46
SMPD1-208ENST00000533123 GRB7Q14451 532 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 ABRAXAS1Q6UWZ7 409 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 UNC5DQ6UXZ4 953 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 LMX1AQ8TE12 382 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 UBTD2Q8WUN7 234 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 PABPN1LA6NDY0 278 aaKnown RBP17.92■□□□□ 0.46
SMPD1-208ENST00000533123 CFIP05156 583 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 ANXA5P08758 320 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 ALDOCP09972 364 aaKnown RBP17.92■□□□□ 0.46
SMPD1-208ENST00000533123 UROSP10746 265 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 PRDX6P30041 224 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 CUL3Q13618 768 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 OR4F6Q8NGB9 312 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 HMGCLL1Q8TB92 370 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 ATP6V1E2Q96A05 226 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 OPTCQ9UBM4 332 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 PCOLCE2Q9UKZ9 415 aa17.92■□□□□ 0.46
SMPD1-208ENST00000533123 TDRKHQ9Y2W6 561 aaKnown RBP17.92■□□□□ 0.46
SMPD1-208ENST00000533123 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.92■□□□□ 0.46
SMPD1-208ENST00000533123 PRAMEF33A0A0G2JMD5 474 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 A6NCN8 305 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PATE3B3GLJ2 98 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 HALP42357 657 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PKNOX1P55347 436 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 HNRNPKP61978 463 aaKnown RBP eCLIP17.91■□□□□ 0.46
SMPD1-208ENST00000533123 TRAF3Q13114 568 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 RPE65Q16518 533 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PEAR1Q5VY43 1037 aaPredicted RBP17.91■□□□□ 0.46
SMPD1-208ENST00000533123 WASH2PQ6VEQ5 465 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 SFTPA2Q8IWL1 248 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 OR5K2Q8NHB8 316 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 CLPTM1LQ96KA5 538 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 FERD3LQ96RJ6 166 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PKP4Q99569 1192 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 WASH6PQ9NQA3 447 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 L3MBTL1Q9Y468 752 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 TMEM131Q92545 1883 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 CAPN1P07384 714 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 F3P13726 295 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PGM1P36871 562 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 NUBP1P53384 320 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 AP1S2P56377 157 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 ELOCQ15369 112 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 FAM46DQ8NEK8 389 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PATE1Q8WXA2 126 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 TUBGCP3Q96CW5 907 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 NUSAP1Q9BXS6 441 aaKnown RBP17.91■□□□□ 0.46
SMPD1-208ENST00000533123 PLAGL1Q9UM63 463 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 ANGPTL3Q9Y5C1 460 aa17.91■□□□□ 0.46
SMPD1-208ENST00000533123 SLC16A8O95907 504 aa17.9■□□□□ 0.46
SMPD1-208ENST00000533123 HTR6P50406 440 aa17.9■□□□□ 0.46
SMPD1-208ENST00000533123 CCNG1P51959 295 aa17.9■□□□□ 0.46
SMPD1-208ENST00000533123 CDKL1Q00532 357 aa17.9■□□□□ 0.46
SMPD1-208ENST00000533123 TTC23LQ6PF05 361 aa17.9■□□□□ 0.46
SMPD1-208ENST00000533123 GK5Q6ZS86 529 aa17.9■□□□□ 0.46
SMPD1-208ENST00000533123 ZNF548Q8NEK5 533 aaPredicted RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms