RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CYP1B1Q16678 543 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 C3orf33Q6P1S2 294 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC36A4Q6YBV0 504 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 FAM83HQ6ZRV2 1179 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ZC3HC1Q86WB0 502 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ALG3Q92685 438 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 DISP2A7MBM2 1401 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ARP10275 920 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 AKT2P31751 481 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ACTC1P68032 377 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 ACTA1P68133 377 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 GTF2H2Q13888 395 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 MAPK14Q16539 360 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 PARP15Q460N3 678 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CDC42EP5Q6NZY7 148 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 GTF2H2CQ6P1K8 395 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 NPNTQ6UXI9 565 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 HSDL2Q6YN16 418 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 COMTD1Q86VU5 262 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 DCP2Q8IU60 420 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 VWA5B2Q8N398 1253 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 AUTS2Q8WXX7 1259 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 IRGQQ8WZA9 623 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CGREF1Q99674 301 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 PAK1IP1Q9NWT1 392 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 FLRT1Q9NZU1 646 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 EXTL2Q9UBQ6 330 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 DNMT3LQ9UJW3 386 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 PRKAB1Q9Y478 270 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 HTRA2O43464 458 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SCGB2A1O75556 95 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 HSD17B2P37059 387 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 PTPN9P43378 593 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CLCN3P51790 818 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 NRG1Q02297 640 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CREB5Q02930 508 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SNTB2Q13425 540 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CBX2Q14781 532 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 SEZ6Q53EL9 994 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 DCLRE1AQ6PJP8 1040 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 CCDC120Q96HB5 630 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 FAXDC2Q96IV6 333 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 PRMT6Q96LA8 375 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 MTMR9Q96QG7 549 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 EPYCQ99645 322 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 DUSP26Q9BV47 211 aa10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 AGO1Q9UL18 857 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-217ENST00000512946 NOBOXO60393 691 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TSPAN15O95858 294 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SCGB1D2O95969 90 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CTSEP14091 401 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PROZP22891 400 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 MAN2A2P49641 1150 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 OAZ1P54368 228 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PUM1Q14671 1186 aaKnown RBP eCLIP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ARL9Q6T311 187 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 FAM183BPQ6ZVS7 135 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CYP4X1Q8N118 509 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SVBPQ8N300 66 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 C3orf58Q8NDZ4 430 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TTLQ8NG68 377 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CDCA5Q96FF9 252 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM121BQ9BXQ6 578 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TMLHEQ9NVH6 421 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TNFSF13BQ9Y275 285 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ASF1AQ9Y294 204 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 INO80Q9ULG1 1556 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SHOXO15266 292 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CAPN15O75808 1086 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PRKCGP05129 697 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF35P13682 527 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CHRNB2P17787 502 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ITPKAP23677 461 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SNTA1Q13424 505 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 IKBKEQ14164 716 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 GALEQ14376 348 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ZACNQ401N2 412 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 MCEMP1Q8IX19 187 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 Q8N402 240 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 FAM109AQ8N4B1 249 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM203Q969S6 136 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SULT4A1Q9BR01 284 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 GBA3Q9H227 469 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PPM1HQ9ULR3 514 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CYP8B1Q9UNU6 501 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 RCCD1A6NED2 376 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 XYLBO75191 536 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 OR12D2P58182 307 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF630Q2M218 657 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PRAMEF13Q5VWM6 474 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 MTFR2Q6P444 385 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 IFNL1Q8IU54 200 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 ARHGAP12Q8IWW6 846 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 LIX1Q8N485 282 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 LRRC52Q8N7C0 313 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 SHKBP1Q8TBC3 707 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 CNOT9Q92600 299 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 COQ10AQ96MF6 247 aa10.98□□□□□ -0.65
LIMCH1-217ENST00000512946 PDCD2LQ9BRP1 358 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms