RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TNKS2Q9H2K2 1166 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 NANOGQ9H9S0 305 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 POP4O95707 220 aaKnown RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 DNTTP04053 509 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 GABRR2P28476 465 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 HTR1EP28566 365 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 PPP1R3AQ16821 1122 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MTMR14Q8NCE2 650 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 OR8J3Q8NGG0 315 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SLC35A5Q9BS91 424 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 IMP3Q9NV31 184 aaKnown RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SPATA7Q9P0W8 599 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SEC14L4Q9UDX3 406 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 EBF1Q9UH73 591 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 PRKAB1Q9Y478 270 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MYH8P13535 1937 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MCIDASD6RGH6 385 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 DLGAP1O14490 977 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 T-ENOLP0DO92 83 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 LINC00471Q8N535 108 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 NATD1Q8N6N6 113 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF354BQ96LW1 612 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 CHIAQ9BZP6 476 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 PADI3Q9ULW8 664 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MRPS33Q9Y291 106 aaKnown RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 A0A0J9YVX5 310 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 HMGN1P05114 100 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 RAB2AP61019 212 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SMU1Q2TAY7 513 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 RPS27LQ71UM5 84 aaKnown RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 CFAP206Q8IYR0 622 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 TOMM5Q8N4H5 51 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SCAMP5Q8TAC9 235 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 LRCH3Q96II8 777 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 KCNA7Q96RP8 456 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 DPAGT1Q9H3H5 408 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 ELL3Q9HB65 397 aaPredicted RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 TMLHEQ9NVH6 421 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MLXQ9UH92 298 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 CD84Q9UIB8 345 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 NEDD8-MDP1E9PL57 170 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MANBAO00462 879 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 HCN1O60741 890 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 ENTPD6O75354 484 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 CDRT1O95170 752 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 LDOC1O95751 146 aaPredicted RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 CHRNA1P02708 482 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 DSTNP60981 165 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 KCNAB2Q13303 367 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 CTC1Q2NKJ3 1217 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 PLA2G4EQ3MJ16 856 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SPIN4Q56A73 249 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM236Q5W0B7 351 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 FRG2Q64ET8 278 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 SLC24A5Q71RS6 500 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 C2orf73Q8N5S3 287 aaPredicted RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 ASCC1Q8N9N2 400 aaKnown RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 UPF1Q92900 1129 aaKnown RBP eCLIP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 FUBP3Q96I24 572 aaKnown RBP eCLIP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 FRG2BQ96QU4 278 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 BCL2L14Q9BZR8 327 aa12.55□□□□□ -0.4
COL3A1-201ENST00000304636 FARSBQ9NSD9 589 aaKnown RBP12.55□□□□□ -0.4
COL3A1-201ENST00000304636 MAGEB3O15480 346 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 STBD1O95210 358 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 GABARAPL2P60520 117 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PIGGQ5H8A4 983 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 UBAP2Q5T6F2 1119 aaKnown RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM53Q6P2H8 277 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 ASB18Q6ZVZ8 466 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 MARCH9Q86YJ5 346 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 MINDY1Q8N5J2 469 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 SLC37A3Q8NCC5 494 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 NPY6RQ99463 290 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 UCK2Q9BZX2 261 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 UCKL1Q9NWZ5 548 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PHF24Q9UPV7 400 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PCDHB3Q9Y5E6 796 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TRIM64CA6NLI5 447 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 HAS3O00219 553 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 CHRM1P11229 460 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 STC1P52823 247 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TNFAIP8L2Q6P589 184 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 SCML4Q8N228 414 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 FAM120CQ9NX05 1096 aaKnown RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PCDHGA3Q9Y5H0 932 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 CPSF4LA6NMK7 179 aaKnown RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 H1F0P07305 194 aaKnown RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 CTSEP14091 401 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 MYF6P23409 242 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 ARF5P84085 180 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 SF1Q15637 639 aaKnown RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 STEAP4Q687X5 459 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 STX12Q86Y82 276 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 KAT2AQ92830 837 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 CLIP3Q96DZ5 547 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM80Q96HE8 168 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PRICKLE1Q96MT3 831 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 FCRL3Q96P31 734 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 BRINP2Q9C0B6 783 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PCBD2Q9H0N5 130 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms