RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	SMAP	O00193	183 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	MAP3K7	O43318	606 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	PRICKLE3	O43900	615 aa	Predicted RBP	12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	ERVK-10	P10266	1014 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	MAG	P20916	626 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	CCNF	P41002	786 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	ITGA1	P56199	1179 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	MC1R	Q01726	317 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	KLHL38	Q2WGJ6	581 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	BBS9	Q3SYG4	887 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	SPANXN3	Q5MJ09	141 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	ATP1A1-AS1	Q5TC04	95 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	HIST2H2BC	Q6DN03	193 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	TAX1BP1	Q86VP1	789 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	SPNS2	Q8IVW8	549 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	CNTN4	Q8IWV2	1026 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	FAM20C	Q8IXL6	584 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	C2CD4A	Q8NCU7	369 aa	Predicted RBP	12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	HMGCLL1	Q8TB92	370 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	DENND1A	Q8TEH3	1009 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	ABHD17A	Q96GS6	310 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	SNF8	Q96H20	258 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	PWWP2A	Q96N64	755 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	FOPNL	Q96NB1	174 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	RUFY1	Q96T51	708 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	IARS2	Q9NSE4	1012 aa	Known RBP	12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	KLHL42	Q9P2K6	505 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	MRFAP1	Q9Y605	127 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	COMMD10	Q9Y6G5	202 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	TEX264	Q9Y6I9	313 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	CCDC88C	Q9P219	2028 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	ANKRD12	Q6UB98	2062 aa		12.82	□□□□□ -0.36
SREBF1-223	ENST00000584760	MDC1	Q14676	2089 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	LRRK2	Q5S007	2527 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	ARHGEF33	A8MVX0	844 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	PSIP1	O75475	530 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	HAUS5	O94927	633 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	ERG	P11308	486 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	TCN2	P20062	427 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	CYP2A7	P20853	494 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	ITGA8	P53708	1063 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	ETF1	P62495	437 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	CUL1	Q13616	776 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	HIF1A	Q16665	826 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	DEFB109B	Q30KR1	87 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	TTLL9	Q3SXZ7	439 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	STEAP4	Q687X5	459 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	FAM199X	Q6PEV8	388 aa	Predicted RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	TTC23L	Q6PF05	361 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	NEK10	Q6ZWH5	1172 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	DSEL	Q8IZU8	1212 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	PDIK1L	Q8N165	341 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	C2orf73	Q8N5S3	287 aa	Predicted RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	CD200R1	Q8TD46	325 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	MAGEC3	Q8TD91	643 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	APOBEC4	Q8WW27	367 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	SLC22A18	Q96BI1	424 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	CERS2	Q96G23	380 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	KRT12	Q99456	494 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	GPR21	Q99679	349 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	AARSD1	Q9BTE6	412 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	CCDC68	Q9H2F9	335 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	ACTL8	Q9H568	366 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	PCMTD2	Q9NV79	361 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	SPATA7	Q9P0W8	599 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	SERTAD3	Q9UJW9	196 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	KCND3	Q9UK17	655 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	SLC39A10	Q9ULF5	831 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	CHMP2B	Q9UQN3	213 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	TEX15	Q9BXT5	2789 aa		12.81	□□□□□ -0.36
SREBF1-223	ENST00000584760	NUP210L	Q5VU65	1888 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760		A0A1W2PPV9	198 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760		E7EQ34	232 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	MYO1C	O00159	1063 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	MEN1	O00255	615 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	CREG1	O75629	220 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	CTSB	P07858	339 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	FURIN	P09958	794 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	PSMB5	P28074	263 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	GABRB3	P28472	473 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	ELK3	P41970	407 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	RPL21	P46778	160 aa	Known RBP	12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	CYP2A13	Q16696	494 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	LACTB2	Q53H82	288 aa	Predicted RBP	12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	ZNF385C	Q66K41	422 aa	Predicted RBP	12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	LCN10	Q6JVE6	187 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	C16orf46	Q6P387	395 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	FAM198B	Q6UWH4	519 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	GALNT7	Q86SF2	657 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	SYTL1	Q8IYJ3	562 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	DNAJC22	Q8N4W6	341 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	RAB42	Q8N4Z0	105 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	SPATA4	Q8NEY3	305 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	MR1	Q95460	341 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	LRRC39	Q96DD0	335 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	NDN	Q99608	321 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	GPR87	Q9BY21	358 aa		12.8	□□□□□ -0.36
SREBF1-223	ENST00000584760	TRIM31	Q9BZY9	425 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms