RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ING2Q9H160 280 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 CLMPQ9H6B4 373 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 XAB2Q9HCS7 855 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 INTS10Q9NVR2 710 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 DHCR7Q9UBM7 475 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 SNX7Q9UNH6 387 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 PCDHGA9Q9Y5G4 932 aaKnown RBP14.29□□□□□ -0.12
CLN3-213ENST00000565047 MED13Q9UHV7 2174 aa14.29□□□□□ -0.12
CLN3-213ENST00000565047 FITM1A5D6W6 292 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 TARM1B6A8C7 271 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 GOLGA8MH3BSY2 632 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 NRP2O60462 931 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 CTSVO60911 334 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 PSIP1O75475 530 aaKnown RBP14.28□□□□□ -0.12
CLN3-213ENST00000565047 USP1O94782 785 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 PKMP14618 531 aaKnown RBP14.28□□□□□ -0.12
CLN3-213ENST00000565047 IVDP26440 423 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 CHAF1BQ13112 559 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 FASTKQ14296 549 aaKnown RBP14.28□□□□□ -0.12
CLN3-213ENST00000565047 C1orf189Q5VU69 101 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 FIGLAQ6QHK4 219 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 CYHR1Q6ZMK1 362 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 TAX1BP1Q86VP1 789 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 HOOK3Q86VS8 718 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 ZUFSPQ96AP4 578 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 FAM136AQ96C01 138 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 PLAC1Q9HBJ0 212 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 KLHL42Q9P2K6 505 aa14.28□□□□□ -0.12
CLN3-213ENST00000565047 SETXQ7Z333 2677 aaKnown RBP14.28□□□□□ -0.12
CLN3-213ENST00000565047 FLNBO75369 2602 aaKnown RBP14.27□□□□□ -0.13
CLN3-213ENST00000565047 ARGFXA6NJG6 315 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 USP27XA6NNY8 438 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 ARHGEF33A8MVX0 844 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 MYO1CO00159 1063 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 KIF5CO60282 957 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 FKBP9O95302 570 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 PAMP19021 973 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 AGXTP21549 392 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 PSMB5P28074 263 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 CCNFP41002 786 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 FOXL2P58012 376 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 DCDP81605 110 aaKnown RBP14.27□□□□□ -0.13
CLN3-213ENST00000565047 FOXK1P85037 733 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 TIAL1Q01085 375 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLN3-213ENST00000565047 KLRB1Q12918 225 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 CTBP1Q13363 440 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 SF1Q15637 639 aaKnown RBP14.27□□□□□ -0.13
CLN3-213ENST00000565047 KLHL38Q2WGJ6 581 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 NKAIN1Q4KMZ8 207 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 COLEC12Q5KU26 742 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 CNSTQ6PJW8 725 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 ASB18Q6ZVZ8 466 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 OR2L3Q8NG85 312 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 ZNF669Q96BR6 464 aaPredicted RBP14.27□□□□□ -0.13
CLN3-213ENST00000565047 RAB11FIP5Q9BXF6 653 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 SYNPO2LQ9H987 977 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 SPATA7Q9P0W8 599 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 SLC39A10Q9ULF5 831 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 SRPK3Q9UPE1 567 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 FAM169AQ9Y6X4 670 aa14.27□□□□□ -0.13
CLN3-213ENST00000565047 IGKV1-8A0A0C4DH67 115 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 ZSCAN12O43309 604 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 MED26O95402 600 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 UMODP07911 640 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 CHRM3P20309 590 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 SLC1A2P43004 574 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 CCL11P51671 97 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 SSPNQ14714 243 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 ZNF470Q6ECI4 717 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 FBXO42Q6P3S6 717 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 CASC4Q6P4E1 433 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 NEK10Q6ZWH5 1172 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 PPIL6Q8IXY8 311 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 OTUD6BQ8N6M0 293 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 FBXO15Q8NCQ5 510 aaPredicted RBP14.26□□□□□ -0.13
CLN3-213ENST00000565047 FDCSPQ8NFU4 85 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 OR9A1PQ8NGU1 263 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 ASB11Q8WXH4 323 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 KCNJ9Q92806 393 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 PDLIM2Q96JY6 352 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 FBXO6Q9NRD1 293 aaPredicted RBP14.26□□□□□ -0.13
CLN3-213ENST00000565047 TRMT1Q9NXH9 659 aaKnown RBP14.26□□□□□ -0.13
CLN3-213ENST00000565047 SAMD15Q9P1V8 674 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 PCYOX1Q9UHG3 505 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 MRFAP1Q9Y605 127 aa14.26□□□□□ -0.13
CLN3-213ENST00000565047 OR2A25A4D2G3 310 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 GFYI3L273 518 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 PFDN6O15212 129 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 FANCGO15287 622 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 TP73O15350 636 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 HAUS5O94927 633 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 MCM3P25205 808 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 GABRB3P28472 473 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 CD97P48960 835 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 ATP1A4Q13733 1029 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 IGFBP7Q16270 282 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 LONRF1Q17RB8 773 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 MSS51Q4VC12 460 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 ZC3H12BQ5HYM0 836 aaKnown RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 MLIPQ5VWP3 458 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms