RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PGRMC2O15173 223 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 NME6O75414 186 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 AKAP3O75969 853 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 PLGP00747 810 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 ANKRD34CP0C6C1 535 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 C8orf89P0DMQ9 161 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 P4HA1P13674 534 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 IRF2P14316 349 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 VCLP18206 1134 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CDC25AP30304 524 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 HOXA11P31270 313 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CTNNB1P35222 781 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 RPL21P46778 160 aaKnown RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 YBEYP58557 167 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 SEC61A1P61619 476 aaKnown RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 RPS18P62269 152 aaKnown RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 TUBA1BP68363 451 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CX3CL1P78423 397 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 ILF2Q12905 390 aaKnown RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 MFAP5Q13361 173 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 SGCBQ16585 318 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 UGT3A2Q3SY77 523 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 IQCCQ4KMZ1 466 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CYP4A22Q5TCH4 519 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 RAB12Q6IQ22 244 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CFAP206Q8IYR0 622 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 ZNF619Q8N2I2 560 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 RASGEF1AQ8N9B8 481 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 LPCAT1Q8NF37 534 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 UBLCP1Q8WVY7 318 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 P2RX5Q93086 422 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 THOC1Q96FV9 657 aaKnown RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 CSTL1Q9H114 145 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 GAREM1Q9H706 876 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 GKN1Q9NS71 199 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 COMMD8Q9NX08 183 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 AKAP7Q9P0M2 348 aaPredicted RBP4.73□□□□□ -1.65
SCFD1-209ENST00000553280 WNT16Q9UBV4 365 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 STX8Q9UNK0 236 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 WDR83OSQ9Y284 106 aa4.73□□□□□ -1.65
SCFD1-209ENST00000553280 ZNF521Q96K83 1311 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 C13orf42A0A1B0GVH6 325 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 A0A1W2PRB8 838 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 C4orf47A7E2U8 309 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 C19orf81C9J6K1 198 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 KBTBD13C9JR72 458 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 RPS6KA5O75582 802 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 PDE9AO76083 593 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 HSPA8P11142 646 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 CCKBRP32239 447 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 THOP1P52888 689 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 RPL24P83731 157 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 SMC1AQ14683 1233 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 HFEQ30201 348 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 AARDQ4LEZ3 155 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 PARP10Q53GL7 1025 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 ASPRV1Q53RT3 343 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 SUSD4Q5VX71 490 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 PODNL1Q6PEZ8 512 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 PIWIL4Q7Z3Z4 852 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 RABEPKQ7Z6M1 372 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 PIGWQ7Z7B1 504 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 LONP2Q86WA8 852 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 APCDD1Q8J025 514 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 SFRP1Q8N474 314 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 RTL3Q8N8U3 475 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 KCNH5Q8NCM2 988 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 LINGO1Q96FE5 620 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 NTPCRQ9BSD7 190 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 PRRG4Q9BZD6 226 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 FKRPQ9H9S5 495 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 CYP39A1Q9NYL5 469 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 SPG21Q9NZD8 308 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 APPL1Q9UKG1 709 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 POU2F3Q9UKI9 436 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 RALYQ9UKM9 306 aaKnown RBP4.72□□□□□ -1.65
SCFD1-209ENST00000553280 FBXW2Q9UKT8 454 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 TMED3Q9Y3Q3 217 aa4.72□□□□□ -1.65
SCFD1-209ENST00000553280 TAF1P21675 1872 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 MAGEA13PA6NCF6 341 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 CD8B2A6NJW9 211 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 HNRNPCL2B2RXH8 293 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 PLOD2O00469 737 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 CTDSPLO15194 276 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 CRCPO75575 148 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 RAD51DO75771 328 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 FCGR1AP12314 374 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 EPORP19235 508 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 JAK1P23458 1154 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 MNDAP41218 407 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 IER3P46695 156 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 FOLH1Q04609 750 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 DMPKQ09013 629 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 ZNF415Q09FC8 603 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 SF3B4Q15427 424 aaKnown RBP eCLIP4.71□□□□□ -1.66
SCFD1-209ENST00000553280 FAM166AQ6J272 317 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 BTNL8Q6UX41 500 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 AMIGO1Q86WK6 493 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 SFR1Q86XK3 245 aa4.71□□□□□ -1.66
SCFD1-209ENST00000553280 TMEM139Q8IV31 216 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms