RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 SUN1O94901 812 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 ITGAXP20702 1163 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 ADRA1DP25100 572 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 STIP1P31948 543 aaKnown RBP12.33□□□□□ -0.44
PTCH1-218ENST00000548945 CCR7P32248 378 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 TSFMP43897 325 aaKnown RBP12.33□□□□□ -0.44
PTCH1-218ENST00000548945 GLRBP48167 497 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 GDF10P55107 478 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 GRM7Q14831 915 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 NKG7Q16617 165 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 CCDC38Q502W7 563 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 TSTD2Q5T7W7 516 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 IRAK1BP1Q5VVH5 260 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 ZNF787Q6DD87 383 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 MYO7BQ6PIF6 2116 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 NAPRTQ6XQN6 538 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 PEX26Q7Z412 305 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 TICAM1Q8IUC6 712 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 SYCE1Q8N0S2 351 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 SLC34A3Q8N130 599 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 DNAAF3Q8N9W5 541 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 OR52K1Q8NGK4 314 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 OR2L8Q8NGY9 312 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 OR4L1Q8NH43 312 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 ZUFSPQ96AP4 578 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 SPSB2Q99619 263 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 RAB11FIP5Q9BXF6 653 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 LACRTQ9GZZ8 138 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 LHPPQ9H008 270 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 ZBTB20Q9HC78 741 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-218ENST00000548945 SEMA3GQ9NS98 782 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 CUTCQ9NTM9 273 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 IMPACTQ9P2X3 320 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 CDC23Q9UJX2 597 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 NOVA2Q9UNW9 492 aaKnown RBP12.33□□□□□ -0.44
PTCH1-218ENST00000548945 NTNG1Q9Y2I2 539 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 REXO2Q9Y3B8 237 aaKnown RBP12.33□□□□□ -0.44
PTCH1-218ENST00000548945 KLK4Q9Y5K2 254 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 HS3ST3B1Q9Y662 390 aa12.33□□□□□ -0.44
PTCH1-218ENST00000548945 OTOGQ6ZRI0 2925 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 RASGRF2O14827 1237 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 SRPX2O60687 465 aaPredicted RBP12.32□□□□□ -0.44
PTCH1-218ENST00000548945 SLCO2B1O94956 709 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 GOT2P00505 430 aaKnown RBP12.32□□□□□ -0.44
PTCH1-218ENST00000548945 APOA4P06727 396 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 AOAHP28039 575 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 FDFT1P37268 417 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 PER3P56645 1201 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 FOXL2P58012 376 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 HSPA14Q0VDF9 509 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 GRB7Q14451 532 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 FAM214AQ32MH5 1076 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 TUBB8Q3ZCM7 444 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 AARS2Q5JTZ9 985 aaKnown RBP12.32□□□□□ -0.44
PTCH1-218ENST00000548945 FIGLAQ6QHK4 219 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 KIRREL2Q6UWL6 708 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 KCNMB4Q86W47 210 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 TTC29Q8NA56 475 aaPredicted RBP12.32□□□□□ -0.44
PTCH1-218ENST00000548945 EPS8L2Q9H6S3 715 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.32□□□□□ -0.44
PTCH1-218ENST00000548945 R3HDM2Q9Y2K5 976 aaKnown RBP12.32□□□□□ -0.44
PTCH1-218ENST00000548945 MRFAP1Q9Y605 127 aa12.32□□□□□ -0.44
PTCH1-218ENST00000548945 PCNX1Q96RV3 2341 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 VSTM2BA6NLU5 285 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 MASP2O00187 686 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 PRICKLE3O43900 615 aaPredicted RBP12.31□□□□□ -0.44
PTCH1-218ENST00000548945 ATXN8OSP0DMR3 200 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 EDN3P14138 238 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 COL8A1P27658 744 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 CSE1LP55060 971 aaKnown RBP12.31□□□□□ -0.44
PTCH1-218ENST00000548945 PRAMEP78395 509 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 ZNF169Q14929 603 aaPredicted RBP12.31□□□□□ -0.44
PTCH1-218ENST00000548945 TMED2Q15363 201 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 TLR1Q15399 786 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 SF1Q15637 639 aaKnown RBP12.31□□□□□ -0.44
PTCH1-218ENST00000548945 HIF1AQ16665 826 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 FASTKD1Q53R41 847 aaKnown RBP12.31□□□□□ -0.44
PTCH1-218ENST00000548945 FCRL6Q6DN72 434 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 TTC23LQ6PF05 361 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 ZNF534Q76KX8 674 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 COX15Q7KZN9 410 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 VRK3Q8IV63 474 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 TMEM151BQ8IW70 566 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 FAM20CQ8IXL6 584 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 LMNTD1Q8N9Z9 388 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 OR6P1Q8NGX9 317 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 HMGCLL1Q8TB92 370 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 DNAJB14Q8TBM8 379 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 SELENOSQ9BQE4 189 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 FRMD8P1Q9BZ68 369 aaPredicted RBP12.31□□□□□ -0.44
PTCH1-218ENST00000548945 SLC2A6Q9UGQ3 507 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 SLC39A10Q9ULF5 831 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 KLHL20Q9Y2M5 609 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 DCHS2Q6V1P9 2916 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 CROCCQ5TZA2 2017 aa12.31□□□□□ -0.44
PTCH1-218ENST00000548945 E2F3O00716 465 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 PRMT5O14744 637 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-218ENST00000548945 KPNA5O15131 536 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 CARSP49589 748 aaKnown RBP12.3□□□□□ -0.44
PTCH1-218ENST00000548945 TTPAP49638 278 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms