RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 PRKACGP22612 351 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 DDOSTP39656 456 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 IL12RB1P42701 662 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 SLAMF1Q13291 335 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 PON2Q15165 354 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 C8orf82Q6P1X6 216 aaPredicted RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 FAM122CQ6P4D5 195 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 LINGO4Q6UY18 593 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 CRIPAKQ8N1N5 446 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 UBASH3BQ8TF42 649 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 LRRC58Q96CX6 371 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 IGSF21Q96ID5 467 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 PPP1R2P1Q96PQ5 205 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 PRKD2Q9BZL6 878 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 KAT8Q9H7Z6 458 aaKnown RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 KIAA0100Q14667 2235 aaKnown RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 PRRC2BQ5JSZ5 2229 aaKnown RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 A0A0U1RQS6 177 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 LOC100506127A0A0U1RQW1 187 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 FADS2P1A8MWK0 482 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 G3V2T6 193 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PLK4O00444 970 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 TSC22D2O75157 780 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 ANGPTL1O95841 491 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 ZDHHC11BP0C7U3 371 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PRSS56P0CW18 603 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 NUDT1P36639 197 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 MTHFRP42898 656 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 RGRP47804 291 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 GABARAPL2P60520 117 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 RING1Q06587 406 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 TOR2AQ5JU69 321 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PNCKQ6P2M8 343 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 HACD2Q6Y1H2 254 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 KCTD20Q7Z5Y7 419 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 CUZD1Q86UP6 607 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 RAB43Q86YS6 212 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 SH3RF2Q8TEC5 729 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 C17orf62Q9BQA9 187 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 TMEM175Q9BSA9 504 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 RHNO1Q9BSD3 238 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 MMP27Q9H306 513 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 NTN4Q9HB63 628 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 TIGARQ9NQ88 270 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 ACOXLQ9NUZ1 547 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 TRPM5Q9NZQ8 1165 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PCDHGB6Q9Y5F9 930 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 H3BMM5 538 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PRRG1O14668 218 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PRAMEF11O60813 436 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 IL7P13232 177 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 LAIR2Q6ISS4 152 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 SPESP1Q6UW49 350 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 CNTN4Q8IWV2 1026 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 EXT2Q93063 718 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 CFHR5Q9BXR6 569 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 ZC4H2Q9NQZ6 224 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 OSGIN1Q9UJX0 560 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 PTGDR2Q9Y5Y4 395 aa13.65□□□□□ -0.22
LIG1-203ENST00000536218 CTDSP2O14595 271 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 FTH1P02794 183 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 CCL5P13501 91 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 YBEYP58557 167 aaPredicted RBP13.65□□□□□ -0.23
LIG1-203ENST00000536218 PTPRRQ15256 657 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 ESCO2Q56NI9 601 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 SLC8B1Q6J4K2 584 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 PRMT9Q6P2P2 845 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 PIM3Q86V86 326 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 YIPF6Q96EC8 236 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 TMEM169Q96HH4 297 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 ARNT2Q9HBZ2 717 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 ATP13A1Q9HD20 1204 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 FNIP2Q9P278 1114 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 ANKRD6Q9Y2G4 727 aa13.65□□□□□ -0.23
LIG1-203ENST00000536218 PATJQ8NI35 1801 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 FXYD1O00168 92 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 DNAJB5O75953 348 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 SERPINF2P08697 491 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ATXN1LP0C7T5 689 aaKnown RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 MAPK12P53778 367 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 SMARCB1Q12824 385 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 TOP3AQ13472 1001 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 SPANXN2Q5MJ10 180 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ARMC4Q5T2S8 1044 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 PIWIL4Q7Z3Z4 852 aaKnown RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 CDH24Q86UP0 819 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 TEX26Q8N6G2 289 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 CINPQ9BW66 212 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 NPAP1Q9NZP6 1156 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.64□□□□□ -0.232e-6■□□□□ 8.3
LIG1-203ENST00000536218 PCDHGC4Q9Y5F7 938 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 DOCK4Q8N1I0 1966 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 TCRBV5S2A0A599 114 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ZNF780AO75290 641 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 STC2O76061 302 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 MT-ND2P03891 347 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 RHOCP08134 193 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ALDOCP09972 364 aaKnown RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 CYP4B1P13584 511 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms