RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 WDR54Q9H977 334 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 CUTCQ9NTM9 273 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-204ENST00000489403 CDC23Q9UJX2 597 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 NOVA2Q9UNW9 492 aaKnown RBP11.89□□□□□ -0.51
CPSF3-204ENST00000489403 HS3ST3B1Q9Y662 390 aa11.89□□□□□ -0.51
CPSF3-204ENST00000489403 RP1L1Q8IWN7 2480 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-204ENST00000489403 CACNA1DQ01668 2161 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 UNC79Q9P2D8 2635 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 RASGRF2O14827 1237 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 PRICKLE3O43900 615 aaPredicted RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 GAS8O95995 478 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 RPN2P04844 631 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 PIM1P11309 404 aaPredicted RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ADRA1DP25100 572 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 AOAHP28039 575 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 FDFT1P37268 417 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 GRIA3P42263 894 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ZNF75DP51815 510 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 PRAMEP78395 509 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ELOAQ14241 798 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 OASLQ15646 514 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 FASTKD1Q53R41 847 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ZC3H12BQ5HYM0 836 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 FIGLAQ6QHK4 219 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 KIRREL2Q6UWL6 708 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 IGFL2Q6UWQ7 119 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 UNC5DQ6UXZ4 953 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 SHISA6Q6ZSJ9 500 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 KIAA1328Q86T90 577 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 LDB1Q86U70 411 aaPredicted RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 SYCE1Q8N0S2 351 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 DTWD1Q8N5C7 304 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ST6GALNAC3Q8NDV1 305 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 OR6P1Q8NGX9 317 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 DENND1AQ8TEH3 1009 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ASZ1Q8WWH4 475 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ZNF285Q96NJ3 590 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 TSSK1BQ9BXA7 367 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 ENAMQ9NRM1 1142 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 INTS7Q9NVH2 962 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 CTSFQ9UBX1 484 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 TCAF1Q9Y4C2 921 aa11.88□□□□□ -0.51
CPSF3-204ENST00000489403 MDC1Q14676 2089 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 PRRC2CQ9Y520 2896 aaKnown RBP11.88□□□□□ -0.51
CPSF3-204ENST00000489403 FITM1A5D6W6 292 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 E2F3O00716 465 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 LIASO43766 372 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 SLCO2B1O94956 709 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 IFNB1P01574 187 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 APOA4P06727 396 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 PSMB5P28074 263 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 STIP1P31948 543 aaKnown RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 OR1D4P47884 311 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 GRM7Q14831 915 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 SF1Q15637 639 aaKnown RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 TUBB8Q3ZCM7 444 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 TCTE1Q5JU00 501 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 AGAP7PQ5VUJ5 663 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 YOD1Q5VVQ6 348 aaPredicted RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 PRUNE1Q86TP1 453 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 KCNMB4Q86W47 210 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 METTL27Q8N6F8 245 aaPredicted RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 TTC29Q8NA56 475 aaPredicted RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 PEX13Q92968 403 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 MRFAP1L1Q96HT8 127 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 HES6Q96HZ4 224 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 AGAP4Q96P64 663 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 SELENOSQ9BQE4 189 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 MRM3Q9HC36 420 aaKnown RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 AGPAT4Q9NRZ5 378 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 MARCH4Q9P2E8 410 aaPredicted RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 NXT1Q9UKK6 140 aaKnown RBP11.87□□□□□ -0.51
CPSF3-204ENST00000489403 SLC39A10Q9ULF5 831 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 NFS1Q9Y697 457 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 CAPN6Q9Y6Q1 641 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 CROCCQ5TZA2 2017 aa11.87□□□□□ -0.51
CPSF3-204ENST00000489403 KRT87PA6NCN2 255 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 VSTM2BA6NLU5 285 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 TARM1B6A8C7 271 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 E7EVH7 732 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 PRMT5O14744 637 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-204ENST00000489403 NRP2O60462 931 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 CTSVO60911 334 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 MED26O95402 600 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 C1orf105O95561 183 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 ETS1P14921 441 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 PPARGP37231 505 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-204ENST00000489403 TSFMP43897 325 aaKnown RBP11.86□□□□□ -0.51
CPSF3-204ENST00000489403 BDKRB1P46663 353 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 Q0VFX4 171 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 TMED2Q15363 201 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 RBBP7Q16576 425 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 CCSMST1Q4G0I0 132 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 AARS2Q5JTZ9 985 aaKnown RBP11.86□□□□□ -0.51
CPSF3-204ENST00000489403 FRMPD2BQ6IN97 320 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 NLRP9Q7RTR0 991 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 TMEM139Q8IV31 216 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 PARP9Q8IXQ6 854 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 OR11G2Q8NGC1 345 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms