RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 EIF3BP55884 814 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 SLC9A5Q14940 896 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 SF1Q15637 639 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 ZC3H12BQ5HYM0 836 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 DCAF10Q5QP82 559 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 VWA5B1Q5TIE3 1220 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 SLC6A19Q695T7 634 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 FCRL6Q6DN72 434 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 MRNIPQ6NTE8 343 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 LRRC8BQ6P9F7 803 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 PIAS4Q8N2W9 510 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 OTUD6BQ8N6M0 293 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 RBMXL3Q8N7X1 1067 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 CLEC1AQ8NC01 280 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 PNPLA2Q96AD5 504 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 FKBP10Q96AY3 582 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 MFSD3Q96ES6 412 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 MFRPQ9BY79 579 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 ENAMQ9NRM1 1142 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 SLC22A11Q9NSA0 550 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 HOMER3Q9NSC5 361 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 SYBUQ9NX95 663 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 P4HTMQ9NXG6 502 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 TTC7AQ9ULT0 858 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 NFS1Q9Y697 457 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 ANKRD12Q6UB98 2062 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 NUP210LQ5VU65 1888 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 SHANK1Q9Y566 2161 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 A0A1B0GX78 115 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 CEP104O60308 925 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 KLHL41O60662 606 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 VAPBO95292 243 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 ONECUT2O95948 504 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 UMODP07911 640 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 PIM1P11309 404 aaPredicted RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 ALAS2P22557 587 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 GNLYP22749 145 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 CCNFP41002 786 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 BDKRB1P46663 353 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 RAPSNQ13702 412 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 INPP5JQ15735 1006 aaPredicted RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 TYSND1Q2T9J0 566 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 TCTE1Q5JU00 501 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 CTSL3PQ5NE16 218 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 RNF187Q5TA31 235 aaPredicted RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 YOD1Q5VVQ6 348 aaPredicted RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 TTLL10Q6ZVT0 673 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 PPP1R32Q7Z5V6 425 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 SDCCAG8Q86SQ7 713 aaPredicted RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 GALNT16Q8N428 558 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 RAB42Q8N4Z0 105 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 Q8NA96 180 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 TRIM58Q8NG06 486 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 HMGCLL1Q8TB92 370 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 SKA2Q8WVK7 121 aaPredicted RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 ZUFSPQ96AP4 578 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 FOPNLQ96NB1 174 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 ZNF285Q96NJ3 590 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 BIRC8Q96P09 236 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 SLAMF7Q9NQ25 335 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 SOX13Q9UN79 622 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 ICE1Q9Y2F5 2266 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 PCM1Q15154 2024 aa15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 TEP1Q99973 2627 aaKnown RBP15.9■□□□□ 0.14
CCDC28B-204ENST00000469003 TCRBV7S3A2A0A539 114 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 TARM1B6A8C7 271 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 DSCR3O14972 297 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 PFDN6O15212 129 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 ALBP02768 609 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 ITGAXP20702 1163 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 VARSP26640 1264 aaKnown RBP15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 FMO4P31512 558 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 GRIA3P42263 894 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 FOXL2P58012 376 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 GBX1Q14549 363 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 GRM7Q14831 915 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 MYBPC3Q14896 1274 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 ARMC3Q5W041 872 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 CES3Q6UWW8 571 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 OVCH1Q7RTY7 1134 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 TTC29Q8NA56 475 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 MAGEC3Q8TD91 643 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 LPGAT1Q92604 370 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 NACC2Q96BF6 587 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 TCF12Q99081 682 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 SELENOSQ9BQE4 189 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 CUTCQ9NTM9 273 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 LUZP4Q9P127 313 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 RUVBL2Q9Y230 463 aaKnown RBP15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 KLK4Q9Y5K2 254 aa15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 RP1L1Q8IWN7 2480 aaPredicted RBP15.89■□□□□ 0.13
CCDC28B-204ENST00000469003 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 GOLGA8KD6RF30 607 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 H3BMM5 538 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 GOLGA8TH3BQL2 631 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 ESR1P03372 595 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 ALPPP05187 535 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 MCM3P25205 808 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 PSMB5P28074 263 aa15.88■□□□□ 0.13
CCDC28B-204ENST00000469003 ATP5DP30049 168 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms