RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SUMO1P63165 101 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CDK16Q00536 496 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 CYP2A13Q16696 494 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 HAGHQ16775 308 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 HMGN2P46Q86SG4 172 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 IFNL2Q8IZJ0 200 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 DYRK2Q92630 601 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 EBF3Q9H4W6 596 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 TM7SF3Q9NS93 570 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 PNPLA3Q9NST1 481 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 B3GALT1Q9Y5Z6 326 aa7.5□□□□□ -1.21
LIMCH1-201ENST00000313860 GRIN2AQ12879 1464 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ELOA3DA6NLF2 546 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CLDN3O15551 220 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 OR2J2O76002 312 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 TSPAN13O95857 204 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 MMP2P08253 660 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PSMA1P25786 263 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RBMXP38159 391 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 HOXA1P49639 335 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 MBTD1Q05BQ5 628 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ECH1Q13011 328 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 BTN1A1Q13410 526 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SURF1Q15526 300 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ELOA3BQ3SY89 546 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 MGAT5BQ3V5L5 792 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 GLRA4Q5JXX5 417 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 FUT10Q6P4F1 479 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CLEC9AQ6UXN8 241 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM83AQ86UY5 434 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 TMC8Q8IU68 726 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RIOX2Q8IUF8 465 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ELOA3Q8NG57 546 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 LMLNQ96KR4 655 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 APBA2Q99767 749 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 REEP2Q9BRK0 252 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 OR1A1Q9P1Q5 309 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDHA7Q9UN72 937 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RNF24Q9Y225 148 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 MRPS2Q9Y399 296 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ISM1B1AKI9 464 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PDXKO00764 312 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CLDN4O14493 209 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CPN2P22792 545 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RPL3P39023 403 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 GATMP50440 423 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 LIMK2P53671 638 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 HLFQ16534 295 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ADGRD1Q6QNK2 874 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RTL4Q6ZR62 310 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ELOA2Q8IYF1 753 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SAMD14Q8IZD0 417 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 BLIDQ8IZY5 108 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PYROXD2Q8N2H3 581 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 HORMAD2Q8N7B1 307 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 OR10H4Q8NGA5 316 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 OR5AR1Q8NGP9 310 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 OR8U1Q8NH10 309 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM213BQ8TBF2 198 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 TFB1MQ8WVM0 346 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 TXNL4BQ9NX01 149 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 NOX1Q9Y5S8 564 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 MEIS3P1A6NDR6 274 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 EEF1E1-BLOC1S5C9J1V9 151 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 EEF1E1O43324 174 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 TSPAN3O60637 253 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RNGTTO60942 597 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SDC3O75056 442 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 MAOAP21397 527 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 BDKRB2P30411 391 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 S100A3P33764 101 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RPS9P46781 194 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 HIST1H3AP68431 136 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 LYSMD3Q7Z3D4 306 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ANKLE2Q86XL3 938 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC9A9Q8IVB4 645 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 GIMAP1Q8WWP7 306 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 DNAJA3Q96EY1 480 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF681Q96N22 645 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 OSBPL7Q9BZF2 842 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 FKRPQ9H9S5 495 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SMURF2Q9HAU4 748 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SNTG2Q9NY99 539 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 WIF1Q9Y5W5 379 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PRR5-ARHGAP8B1AHC4 643 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 HCRTR2O43614 444 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CDRT1O95170 752 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 SPDEFO95238 335 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ITGA5P08648 1049 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 STSP08842 583 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ADH5P11766 374 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PRDX6P30041 224 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 LSSP48449 732 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 RORCP51449 518 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 ELF3P78545 371 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PRR5P85299 388 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 CDK17Q00537 523 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 AKR1C1Q04828 323 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 PRKAA1Q13131 559 aa7.49□□□□□ -1.21
LIMCH1-201ENST00000313860 GRB10Q13322 594 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms