RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 NKX2-8O15522 239 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 HCRTR1O43613 425 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 HAUS5O94927 633 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CCNYL3P0C7X3 344 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 SPTBP11277 2137 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 MAGP20916 626 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CASQ1P31415 396 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CCNFP41002 786 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 ELK3P41970 407 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CDC20Q12834 499 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 GPS2Q13227 327 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CUL1Q13616 776 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 TBR1Q16650 682 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 HIF1AQ16665 826 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 KLHL38Q2WGJ6 581 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 DEFB110Q30KQ9 67 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.57□□□□□ -0.4
CNOT1-220ENST00000569916 HP1BP3Q5SSJ5 553 aaPredicted RBP12.57□□□□□ -0.4
CNOT1-220ENST00000569916 TTC23LQ6PF05 361 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 SYT10Q6XYQ8 523 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CNTN4Q8IWV2 1026 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 FAM20CQ8IXL6 584 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 PDIK1LQ8N165 341 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 C2orf73Q8N5S3 287 aaPredicted RBP12.57□□□□□ -0.4
CNOT1-220ENST00000569916 SLC38A9Q8NBW4 561 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 C2CD4AQ8NCU7 369 aaPredicted RBP12.57□□□□□ -0.4
CNOT1-220ENST00000569916 SPATA4Q8NEY3 305 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 DENND1AQ8TEH3 1009 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CERS2Q96G23 380 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 TCTN2Q96GX1 697 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 FOPNLQ96NB1 174 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 RAB11FIP5Q9BXF6 653 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 SEMA4CQ9C0C4 833 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CCDC68Q9H2F9 335 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 KLHL42Q9P2K6 505 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 PADI1Q9ULC6 663 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 SLC39A10Q9ULF5 831 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 CHMP2BQ9UQN3 213 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 TEX264Q9Y6I9 313 aa12.57□□□□□ -0.4
CNOT1-220ENST00000569916 ARHGEF33A8MVX0 844 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 H3BMH7 237 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 MAP3K7O43318 606 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 PRICKLE3O43900 615 aaPredicted RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 PSIP1O75475 530 aaKnown RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 PRKAR1AP10644 381 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 TCN2P20062 427 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 OAS2P29728 719 aaKnown RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 RORAP35398 523 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 RPL21P46778 160 aaKnown RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 ITGA1P56199 1179 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 ARL4CP56559 192 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 MRPS25P82663 173 aaKnown RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 C2orf54Q08AI8 447 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 DNASE1L3Q13609 305 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 TTLL9Q3SXZ7 439 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 CRTC2Q53ET0 693 aaPredicted RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 STEAP4Q687X5 459 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 FAM199XQ6PEV8 388 aaPredicted RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 ZNF517Q6ZMY9 492 aaPredicted RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 NEK10Q6ZWH5 1172 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 EXD3Q8N9H8 876 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 HMGCLL1Q8TB92 370 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 CD200R1Q8TD46 325 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 MAGEC3Q8TD91 643 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 SLC22A18Q96BI1 424 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 LRRC39Q96DD0 335 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 LRFN5Q96NI6 719 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 RUFY1Q96T51 708 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 GPR21Q99679 349 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 AARSD1Q9BTE6 412 aaKnown RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 SPATA7Q9P0W8 599 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 SLC17A6Q9P2U8 582 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 ZC3H7BQ9UGR2 993 aaKnown RBP12.56□□□□□ -0.4
CNOT1-220ENST00000569916 KCND3Q9UK17 655 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 DHRS7Q9Y394 339 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 PCDHGA6Q9Y5G7 932 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 COMMD10Q9Y6G5 202 aa12.56□□□□□ -0.4
CNOT1-220ENST00000569916 A0A1W2PPV9 198 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 C21orf140B9A014 251 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 E7ESA3 106 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 CTSBP07858 339 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 ERGP11308 486 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 CYP2A7P20853 494 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 PSMB5P28074 263 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 GABRB3P28472 473 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 TIAL1Q01085 375 aaKnown RBP eCLIP12.55□□□□□ -0.4
CNOT1-220ENST00000569916 MC1RQ01726 317 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 ATP1A1-AS1Q5TC04 95 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 TRMT10BQ6PF06 316 aaKnown RBP12.55□□□□□ -0.4
CNOT1-220ENST00000569916 KIAA0408Q6ZU52 694 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 CPNE9Q8IYJ1 553 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 DSELQ8IZU8 1212 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 DNAJC22Q8N4W6 341 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 RAB42Q8N4Z0 105 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 GABPB2Q8TAK5 448 aaPredicted RBP12.55□□□□□ -0.4
CNOT1-220ENST00000569916 MED8Q96G25 268 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 CFAP36Q96G28 342 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 CATSPER2Q96P56 530 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 NDNQ99608 321 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 ACTR5Q9H9F9 607 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms