RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	MOCS2	O96007	188 aa	Predicted RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	IGLV3-25	P01717	112 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ANXA6	P08133	673 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	HMBS	P08397	361 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	LTA4H	P09960	611 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ZDHHC11B	P0C7U3	371 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	EPCAM	P16422	314 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	HOXB6	P17509	224 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	KCNA5	P22460	613 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	CD6	P30203	668 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ADRA1B	P35368	520 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	TGFBR2	P37173	567 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ARL1	P40616	181 aa	Predicted RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	CXCR3	P49682	368 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC12A2	P55011	1212 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	KCNK10	P57789	538 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	LSM3	P62310	102 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	RACK1	P63244	317 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ACAP2	Q15057	778 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC14A2	Q15849	920 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	TPRG1L	Q5T0D9	272 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	CLEC6A	Q6EIG7	209 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	MSANTD2	Q6P1R3	559 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	PKN3	Q6P5Z2	889 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	SYCE2	Q6PIF2	218 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	IFNE	Q86WN2	208 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	FAM109A	Q8N4B1	249 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	AMER2	Q8N7J2	671 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	C2CD4A	Q8NCU7	369 aa	Predicted RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ITFG1	Q8TB96	612 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	SETD6	Q8TBK2	473 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	PIK3R3	Q92569	461 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	MARVELD3	Q96A59	401 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ISG20	Q96AZ6	181 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	TSPAN17	Q96FV3	270 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	TRMT2B	Q96GJ1	504 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	VAT1	Q99536	393 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	CCDC32	Q9BV29	185 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ZNF334	Q9HCZ1	680 aa	Predicted RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	OLA1	Q9NTK5	396 aa	Known RBP	10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	MARCH2	Q9P0N8	246 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ERVW-1	Q9UQF0	538 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	GPSM3	Q9Y4H4	160 aa		10.83	□□□□□ -0.68
TCF4-222	ENST00000564228	ATP6AP2	A0A1C7CYW4	349 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ZNF840P	A6NDX5	716 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	EPOP	A6NHQ4	379 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228		I6L893	689 aa	Predicted RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ERVH48-1	M5A8F1	160 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	SHOX	O15266	292 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ATP6AP2	O75787	350 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	YES1	P07947	543 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	CCR1	P32246	355 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	S100A5	P33763	92 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	TBX4	P57082	545 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	YBX1	P67809	324 aa	Known RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	BNC1	Q01954	994 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	DSG2	Q14126	1118 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	RPS6KA2	Q15349	733 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	PCID2	Q5JVF3	399 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ZNF678	Q5SXM1	525 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	GLYAT	Q6IB77	296 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ADGRD2	Q7Z7M1	963 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	CELF2-AS1	Q8N7Q2	184 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	PSD4	Q8NDX1	1056 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	DNAJB14	Q8TBM8	379 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	OVCA2	Q8WZ82	227 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	RNF170	Q96K19	258 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	CCDC115	Q96NT0	180 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	GIMAP4	Q9NUV9	329 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	SCN3B	Q9NY72	215 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ERVK-18	Q9QC07	812 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	UXT	Q9UBK9	157 aa	Predicted RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	TLR6	Q9Y2C9	796 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ORC6	Q9Y5N6	252 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	SNX10	Q9Y5X0	201 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	GPR45	Q9Y5Y3	372 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	NOTCH4	Q99466	2003 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC12A8	A0AV02	714 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ASPDH	A6ND91	283 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	HMX3	A6NHT5	357 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	RFXAP	O00287	272 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	CDK2AP1	O14519	115 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	BCKDK	O14874	412 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	DCLK1	O15075	740 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	POLR2C	P19387	275 aa	Predicted RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	PSMB9	P28065	219 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	GGT5	P36269	586 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	ATP5C1	P36542	298 aa	Known RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	SLC26A3	P40879	764 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	RPS5	P46782	204 aa	Known RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	MASP1	P48740	699 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	PGGT1B	P53609	377 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	AP2S1	P53680	142 aa	Predicted RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	AIF1	P55008	147 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	OR4D2	P58180	307 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	EIF4EBP2	Q13542	120 aa	Predicted RBP	10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	GPR50	Q13585	617 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	CSHL1	Q14406	222 aa		10.82	□□□□□ -0.68
TCF4-222	ENST00000564228	STARD3	Q14849	445 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms