RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLC41A1Q8IVJ1 513 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LINC00469Q8N7U9 141 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 FLCNQ8NFG4 579 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 ZFAND1Q8TCF1 268 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 NAT9Q9BTE0 207 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 MMP28Q9H239 520 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 GRIP1Q9Y3R0 1128 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 SLC12A8A0AV02 714 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 BBIP1A8MTZ0 92 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 HOXA2O43364 376 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 B3GALNT1O75752 331 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 CNTN5O94779 1100 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 ANGPTL1O95841 491 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 ZNF250P15622 560 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 CCR1P32246 355 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 PLK1P53350 603 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 RHAGQ02094 409 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 FAPQ12884 760 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 EIF4EBP2Q13542 120 aaPredicted RBP13.01□□□□□ -0.33
CLK3-206ENST00000562078 LAPTM5Q13571 262 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 PON2Q15165 354 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 DDR2Q16832 855 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 KCTD11Q693B1 232 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LAIR1Q6GTX8 287 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 LARP4Q71RC2 724 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLK3-206ENST00000562078 FRS2Q8WU20 508 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 OR2A14Q96R47 310 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLK3-206ENST00000562078 RNF167Q9H6Y7 350 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 OSER1Q9NX31 292 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 EIF3KQ9UBQ5 218 aaKnown RBP13.01□□□□□ -0.33
CLK3-206ENST00000562078 TRHDEQ9UKU6 1024 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 NDUFAF1Q9Y375 327 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 PTGDR2Q9Y5Y4 395 aa13.01□□□□□ -0.33
CLK3-206ENST00000562078 FAM92AA1XBS5 289 aa13□□□□□ -0.33
CLK3-206ENST00000562078 H3BMM5 538 aa13□□□□□ -0.33
CLK3-206ENST00000562078 KCNA5P22460 613 aa13□□□□□ -0.33
CLK3-206ENST00000562078 PRKACGP22612 351 aa13□□□□□ -0.33
CLK3-206ENST00000562078 IL12RB1P42701 662 aa13□□□□□ -0.33
CLK3-206ENST00000562078 SMARCB1Q12824 385 aa13□□□□□ -0.33
CLK3-206ENST00000562078 SOWAHCQ53LP3 525 aaPredicted RBP13□□□□□ -0.33
CLK3-206ENST00000562078 ZNF691Q5VV52 312 aa13□□□□□ -0.33
CLK3-206ENST00000562078 SHEQ5VZ18 495 aa13□□□□□ -0.33
CLK3-206ENST00000562078 DENND5AQ6IQ26 1287 aa13□□□□□ -0.33
CLK3-206ENST00000562078 CNKSR3Q6P9H4 555 aa13□□□□□ -0.33
CLK3-206ENST00000562078 PIWIL4Q7Z3Z4 852 aaKnown RBP13□□□□□ -0.33
CLK3-206ENST00000562078 B3GNT8Q7Z7M8 397 aa13□□□□□ -0.33
CLK3-206ENST00000562078 PTRH1Q86Y79 214 aaKnown RBP13□□□□□ -0.33
CLK3-206ENST00000562078 NPAS4Q8IUM7 802 aa13□□□□□ -0.33
CLK3-206ENST00000562078 OR8H2Q8N162 312 aa13□□□□□ -0.33
CLK3-206ENST00000562078 TTC9BQ8N6N2 239 aa13□□□□□ -0.33
CLK3-206ENST00000562078 TBRG4Q969Z0 631 aaKnown RBP eCLIP13□□□□□ -0.337e-11■■■■■ 32
CLK3-206ENST00000562078 B3GALT6Q96L58 329 aa13□□□□□ -0.33
CLK3-206ENST00000562078 FCRL2Q96LA5 508 aaPredicted RBP13□□□□□ -0.33
CLK3-206ENST00000562078 GPR78Q96P69 363 aa13□□□□□ -0.33
CLK3-206ENST00000562078 LIN7BQ9HAP6 207 aa13□□□□□ -0.33
CLK3-206ENST00000562078 TMEM189-UBE2V1I3L0A0 370 aa13□□□□□ -0.33
CLK3-206ENST00000562078 OAZ2O95190 189 aa13□□□□□ -0.33
CLK3-206ENST00000562078 MSH3P20585 1137 aa13□□□□□ -0.33
CLK3-206ENST00000562078 CSRP3P50461 194 aa13□□□□□ -0.33
CLK3-206ENST00000562078 ZNF267Q14586 743 aaPredicted RBP13□□□□□ -0.33
CLK3-206ENST00000562078 CERCAMQ5T4B2 595 aa13□□□□□ -0.33
CLK3-206ENST00000562078 NDUFAF5Q5TEU4 345 aa13□□□□□ -0.33
CLK3-206ENST00000562078 KCNMB4Q86W47 210 aa13□□□□□ -0.33
CLK3-206ENST00000562078 ARHGAP12Q8IWW6 846 aa13□□□□□ -0.33
CLK3-206ENST00000562078 DCP1BQ8IZD4 617 aaKnown RBP13□□□□□ -0.33
CLK3-206ENST00000562078 ATPAF2Q8N5M1 289 aa13□□□□□ -0.33
CLK3-206ENST00000562078 GPR152Q8TDT2 470 aa13□□□□□ -0.33
CLK3-206ENST00000562078 TEKT5Q96M29 485 aa13□□□□□ -0.33
CLK3-206ENST00000562078 CASD1Q96PB1 797 aa13□□□□□ -0.33
CLK3-206ENST00000562078 ACOT13Q9NPJ3 140 aa13□□□□□ -0.33
CLK3-206ENST00000562078 CASS4Q9NQ75 786 aa13□□□□□ -0.33
CLK3-206ENST00000562078 BFARQ9NZS9 450 aa13□□□□□ -0.33
CLK3-206ENST00000562078 SLAMF8Q9P0V8 285 aa13□□□□□ -0.33
CLK3-206ENST00000562078 ANKRD6Q9Y2G4 727 aa13□□□□□ -0.33
CLK3-206ENST00000562078 OAS3Q9Y6K5 1087 aaKnown RBP13□□□□□ -0.33
CLK3-206ENST00000562078 AIREO43918 545 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 HS6ST1O60243 411 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 PRSS23O95084 383 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 FOSL1P15407 271 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ITGA2P17301 1181 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 LIPAP38571 399 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 DBPQ10586 325 aaPredicted RBP12.99□□□□□ -0.33
CLK3-206ENST00000562078 RAPSNQ13702 412 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ZNF470Q6ECI4 717 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 TMEM65Q6PI78 240 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLK3-206ENST00000562078 CEP97Q8IW35 865 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 TMEM199Q8N511 208 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ZNF419Q96HQ0 510 aaPredicted RBP12.99□□□□□ -0.33
CLK3-206ENST00000562078 REXO5Q96IC2 774 aaKnown RBP12.99□□□□□ -0.33
CLK3-206ENST00000562078 VAT1Q99536 393 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 GPR22Q99680 433 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 HDHD5Q9BXW7 423 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ZNF556Q9HAH1 456 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 WASH6PQ9NQA3 447 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 HCSTQ9UBK5 93 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 ERI2A8K979 691 aaKnown RBP12.99□□□□□ -0.33
CLK3-206ENST00000562078 UBXN8O00124 270 aa12.99□□□□□ -0.33
CLK3-206ENST00000562078 HPRP00739 348 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms