RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GPAT4Q86UL3 456 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 EXOC3L1Q86VI1 746 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 ZNF114Q8NC26 417 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 MCPH1Q8NEM0 835 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 DNAAF4Q8WXU2 420 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 DNASE1L2Q92874 299 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 FAM149B1Q96BN6 582 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 NXPE2Q96DL1 559 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 BICD1Q96G01 975 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 ZNF558Q96NG5 402 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 IL17FQ96PD4 163 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 NODALQ96S42 347 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 MAP7D2Q96T17 732 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 CWH43Q9H720 699 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 CYP39A1Q9NYL5 469 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 DONSONQ9NYP3 566 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 SPG21Q9NZD8 308 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 EHD2Q9NZN4 543 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 RAI14Q9P0K7 980 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 MALT1Q9UDY8 824 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 ZNF215Q9UL58 517 aaPredicted RBP3.8□□□□□ -1.8
CD44-235ENST00000532339 A4GNTQ9UNA3 340 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.8□□□□□ -1.8
CD44-235ENST00000532339 PCDHGB5Q9Y5G0 923 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 SNX8Q9Y5X2 465 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 MYH7BA7E2Y1 1941 aa3.8□□□□□ -1.8
CD44-235ENST00000532339 KIF26AQ9ULI4 1882 aaPredicted RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 PHLPP2Q6ZVD8 1323 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 FRMD3A2A2Y4 597 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 MAGEA13PA6NCF6 341 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 A8MZ25 164 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 BMPR1BO00238 502 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 TIMM23O14925 209 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 SOCS5O75159 536 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 TSPAN9O75954 239 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 GH1P01241 217 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CHRNA1P02708 482 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 KRT10P13645 584 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CTPS1P17812 591 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 TCEA1P23193 301 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 KRT20P35900 424 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 PPARGP37231 505 aaPredicted RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 UBA7P41226 1012 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CLCN4P51793 760 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 HDAC4P56524 1084 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CLDN2P57739 230 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 SNX16P57768 344 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 YWHAZP63104 245 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 SLC18A2Q05940 514 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 GABPAQ06546 454 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 ARHGAP1Q07960 439 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 ACSM2AQ08AH3 577 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 ILF3Q12906 894 aaKnown RBP eCLIP3.79□□□□□ -1.8
CD44-235ENST00000532339 EPS8Q12929 822 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 DLG1Q12959 904 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CSTF3Q12996 717 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 BECN1Q14457 450 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 IRF3Q14653 427 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 MAPK6Q16659 721 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 KRTAP24-1Q3LI83 254 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CFAP58Q5T655 872 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 KLHL35Q6PF15 583 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 RHBDF2Q6PJF5 856 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 FAM43BQ6ZT52 329 aaPredicted RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 GLRX5Q86SX6 157 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 DENND6AQ8IWF6 608 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 ARHGAP12Q8IWW6 846 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 NAGSQ8N159 534 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 TMTC2Q8N394 836 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 AADATQ8N5Z0 425 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 RASSF8Q8NHQ8 419 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 PSPC1Q8WXF1 523 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 FAM3CQ92520 227 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 SMARCE1Q969G3 411 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 RNF183Q96D59 192 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 MMTAG2Q9BU76 263 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 NUSAP1Q9BXS6 441 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 PLEKHA4Q9H4M7 779 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 FBRSL1Q9HCM7 1045 aaKnown RBP3.79□□□□□ -1.8
CD44-235ENST00000532339 ABI3Q9P2A4 366 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CTNNAL1Q9UBT7 734 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 CDH7Q9ULB5 785 aa3.79□□□□□ -1.8
CD44-235ENST00000532339 C2orf16Q68DN1 1984 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 LRRC53A6NM62 1247 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 MYO1GB0I1T2 1018 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 NPIPB11E5RHQ5 1161 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 EBAG9O00559 213 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 CLGNO14967 610 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 P4HA2O15460 535 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 DIAPH2O60879 1101 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 ATP9AO75110 1047 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 VNN2O95498 520 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 ADRB2P07550 413 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 ZNF286BP0CG31 522 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 CD59P13987 128 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 SLC2A4P14672 509 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 IL11P20809 199 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 RYKP34925 604 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 CENPAP49450 140 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 ATXN3P54252 364 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms