RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MYL6BP14649 208 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 ZNF12P17014 697 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 ITGA2P17301 1181 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 FBLP22087 321 aaKnown RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 GNL1P36915 607 aaPredicted RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 PSMC4P43686 418 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 PCYT1AP49585 367 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 YBEYP58557 167 aaPredicted RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 DLG1Q12959 904 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 MFAP5Q13361 173 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 SMC1AQ14683 1233 aaKnown RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 CTU2Q2VPK5 515 aaKnown RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 HFEQ30201 348 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 MCMDC2Q4G0Z9 681 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 IQCCQ4KMZ1 466 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 AARDQ4LEZ3 155 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 ELFN2Q5R3F8 820 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 NDUFAF5Q5TEU4 345 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 SUSD4Q5VX71 490 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 OR7E24Q6IFN5 339 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 RAB12Q6IQ22 244 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 C11orf63Q6NUN7 778 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 CYB5D1Q6P9G0 228 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 RAD9BQ6WBX8 426 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 ARHGAP22Q7Z5H3 698 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 EXOC3L1Q86VI1 746 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 KMT5CQ86Y97 462 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 ADHFE1Q8IWW8 467 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 DCP1BQ8IZD4 617 aaKnown RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 RYBPQ8N488 228 aaPredicted RBP4.85□□□□□ -1.63
UPF3B-203ENST00000478840 RASGEF1AQ8N9B8 481 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 THAP8Q8NA92 274 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 SMRP1Q8NCR6 262 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 LPCAT1Q8NF37 534 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 OR13J1Q8NGT2 312 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 FIG4Q92562 907 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 P2RX5Q93086 422 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 PHF21BQ96EK2 531 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 SGF29Q96ES7 293 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 STAMBPL1Q96FJ0 436 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 C1QTNF7Q9BXJ2 289 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 THAP9Q9H5L6 903 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 UBTD1Q9HAC8 227 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 GKN1Q9NS71 199 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 TRPC4Q9UBN4 977 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 GPR132Q9UNW8 380 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 ACEP12821 1306 aa4.85□□□□□ -1.63
UPF3B-203ENST00000478840 H3BNX3 289 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 GAPDHSO14556 408 aaPredicted RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 PRAF2O60831 178 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 AKAP3O75969 853 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 GSRP00390 522 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 PLGP00747 810 aaPredicted RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 C8orf89P0DMQ9 161 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 ACP2P11117 423 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 IRF2P14316 349 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 CBLP22681 906 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 CCND3P30281 292 aaPredicted RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 IER3P46695 156 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 GSDMDP57764 484 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 CX3CL1P78423 397 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 RELQ04864 619 aaPredicted RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 VEZF1Q14119 521 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 SGCBQ16585 318 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 DUOXA1Q1HG43 343 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 UGT3A2Q3SY77 523 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 RABEPKQ7Z6M1 372 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 PELI3Q8N2H9 469 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 SFRP1Q8N474 314 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 NCOA7Q8NI08 942 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 IRGQQ8WZA9 623 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 PROX1Q92786 737 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 OXNAD1Q96HP4 312 aaPredicted RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 KLHL5Q96PQ7 755 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 SLC2A11Q9BYW1 496 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 TM6SF1Q9BZW5 370 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 LSG1Q9H089 658 aaKnown RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 GAREM1Q9H706 876 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 GSN-AS1Q9NRJ2 163 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 COMMD8Q9NX08 183 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 TMEM161AQ9NX61 479 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 SPG21Q9NZD8 308 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 AKAP7Q9P0M2 348 aaPredicted RBP4.84□□□□□ -1.63
UPF3B-203ENST00000478840 ODF2LQ9ULJ1 636 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 VDAC3Q9Y277 283 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 WDR83OSQ9Y284 106 aa4.84□□□□□ -1.63
UPF3B-203ENST00000478840 COL3A1P02461 1466 aaPredicted RBP4.83□□□□□ -1.64
UPF3B-203ENST00000478840 CGNL1Q0VF96 1302 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 C13orf42A0A1B0GVH6 325 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 SMIM30A4D0T7 59 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 WDR91A4D1P6 747 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 KBTBD13C9JR72 458 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 E9PI62 339 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 SEC22BO75396 215 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 PRSS2P07478 247 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 HSPA8P11142 646 aaKnown RBP4.83□□□□□ -1.64
UPF3B-203ENST00000478840 CCKBRP32239 447 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 HMGA2P52926 109 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms