RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 OLFML3Q9NRN5 406 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 DNAJB9Q9UBS3 223 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 GRIP1Q9Y3R0 1128 aa3.25□□□□□ -1.89
VPS41-207ENST00000439468 KIF21AQ7Z4S6 1674 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 TRAV34A0A0B4J273 112 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 ARHGEF37A1IGU5 675 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 FGF17O60258 216 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 GBAP04062 536 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 CD27P26842 260 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 HOXC8P31273 242 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 PTGER4P35408 488 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 LHX1P48742 406 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 LIMK1P53667 647 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 GSDMDP57764 484 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 LINC01547P58512 204 aaPredicted RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 MAT1AQ00266 395 aaKnown RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 POU5F1Q01860 360 aaKnown RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 SCARB2Q14108 478 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 CA9Q16790 459 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 ITPRIPL2Q3MIP1 535 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 MCMDC2Q4G0Z9 681 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 TCTE1Q5JU00 501 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 PRR27Q6MZM9 219 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 MFSD6Q6ZSS7 791 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 SMIM29Q86T20 159 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 METTL23Q86XA0 190 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 OR8H3Q8N146 312 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 BMPERQ8N8U9 685 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 KBTBD8Q8NFY9 601 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 OR1J1Q8NGS3 322 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 OCC1Q8TAD7 63 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 KCNE4Q8WWG9 221 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 FCAMRQ8WWV6 532 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 HSD17B8Q92506 261 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 DHX58Q96C10 678 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 SPATA17Q96L03 361 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 ZNF354BQ96LW1 612 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 SGK494Q96LW2 274 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 RAB3IPQ96QF0 476 aaPredicted RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 INTS14Q96SY0 518 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 ADPGKQ9BRR6 497 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 TFB2MQ9H5Q4 396 aaKnown RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 FKRPQ9H9S5 495 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 ZNF701Q9NV72 531 aaPredicted RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.24□□□□□ -1.89
VPS41-207ENST00000439468 POLLQ9UGP5 575 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 WDR83OSQ9Y284 106 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 KCNK7Q9Y2U2 307 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 POMT1Q9Y6A1 747 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 HEG1Q9ULI3 1381 aa3.24□□□□□ -1.89
VPS41-207ENST00000439468 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 PRR32B1ATL7 298 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 DNM1LO00429 736 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 CLDN4O14493 209 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 GSRP00390 522 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 TSHBP01222 138 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 CSN3P07498 182 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 LBPP18428 481 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 HOXC13P31276 330 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 DCTP40126 519 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 NKX2-1P43699 371 aaPredicted RBP3.23□□□□□ -1.89
VPS41-207ENST00000439468 CAPZA1P52907 286 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 HILS1P60008 231 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 PTENP60484 403 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 LGALS3BPQ08380 585 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 UGT3A2Q3SY77 523 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 ACCSLQ4AC99 568 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 WDR38Q5JTN6 314 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 LINGO4Q6UY18 593 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 SLC26A9Q7LBE3 791 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 SPATA19Q7Z5L4 167 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 RTN4RL2Q86UN3 420 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 PLD3Q8IV08 490 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 GPALPP1Q8IXQ4 340 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 EID3Q8N140 333 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 MAPKAPK5-AS1Q8N8E1 139 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 VANGL1Q8TAA9 524 aaPredicted RBP3.23□□□□□ -1.89
VPS41-207ENST00000439468 SETD6Q8TBK2 473 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 PIGBQ92521 554 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 NSMAFQ92636 917 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 MOB3AQ96BX8 217 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 LRRC3BQ96PB8 259 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 THUMPD3Q9BV44 507 aaKnown RBP3.23□□□□□ -1.89
VPS41-207ENST00000439468 MMP28Q9H239 520 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 RAB9BQ9NP90 201 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 PFDN4Q9NQP4 134 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 CACNG4Q9UBN1 327 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 GTF3C4Q9UKN8 822 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 SLC7A7Q9UM01 511 aa3.23□□□□□ -1.89
VPS41-207ENST00000439468 ARAP1Q96P48 1450 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 SMCHD1A6NHR9 2005 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 SPATA31D1Q6ZQQ2 1576 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 FAM172BPA6NC97 362 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 ANXA2P2A6NMY6 339 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 ERVV-2B6SEH9 535 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 P2RY10O00398 339 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 SLC22A2O15244 555 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 SLC7A4O43246 635 aa3.22□□□□□ -1.89
VPS41-207ENST00000439468 PRKNO60260 465 aaPredicted RBP3.22□□□□□ -1.89
VPS41-207ENST00000439468 CIDEAO60543 219 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms