RNA–Protein interactions for RNA: snR38

snR38, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR38, Length 95 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR38	snR38	RRN6	P32786	894 aa		0.88	□□□□□ -2.27
snR38	snR38	TDP1	P38319	544 aa		0.88	□□□□□ -2.27
snR38	snR38	SIP5	P40210	489 aa	Known RBP	0.88	□□□□□ -2.27
snR38	snR38	PMT7	Q06644	662 aa		0.88	□□□□□ -2.27
snR38	snR38	MRH1	Q12117	320 aa	Predicted RBP	0.88	□□□□□ -2.27
snR38	snR38	APL1	P27351	700 aa		0.87	□□□□□ -2.27
snR38	snR38	BAP2	P38084	609 aa		0.87	□□□□□ -2.27
snR38	snR38	QNS1	P38795	714 aa	Known RBP	0.87	□□□□□ -2.27
snR38	snR38	MET30	P39014	640 aa		0.87	□□□□□ -2.27
snR38	snR38	YIL166C	P40445	542 aa		0.87	□□□□□ -2.27
snR38	snR38	DAS1	P47005	663 aa		0.87	□□□□□ -2.27
snR38	snR38	GCV2	P49095	1034 aa		0.87	□□□□□ -2.27
snR38	snR38	HOS3	Q02959	697 aa	Known RBP	0.87	□□□□□ -2.27
snR38	snR38	PUF6	Q04373	656 aa	Known RBP	0.87	□□□□□ -2.27
snR38	snR38	ARO10	Q06408	635 aa		0.87	□□□□□ -2.27
snR38	snR38	PUN1	Q06991	263 aa		0.87	□□□□□ -2.27
snR38	snR38	NOB1	Q08444	459 aa	Known RBP	0.87	□□□□□ -2.27
snR38	snR38	TY1A-LR4	P0C2I8	440 aa	Known RBP	0.86	□□□□□ -2.27
snR38	snR38	TY1A-DR6	P0CX70	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-ER1	P0CX71	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-LR2	P0CX72	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-PL	P0CX73	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-JR1	P0CX74	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-LR3	P0CX75	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-ML2	P0CX76	440 aa		0.86	□□□□□ -2.27
snR38	snR38	ERG4	P25340	473 aa		0.86	□□□□□ -2.27
snR38	snR38	GEF1	P37020	779 aa		0.86	□□□□□ -2.27
snR38	snR38	POA1	P38218	177 aa		0.86	□□□□□ -2.27
snR38	snR38	MET12	P46151	657 aa		0.86	□□□□□ -2.27
snR38	snR38	CTR9	P89105	1077 aa		0.86	□□□□□ -2.27
snR38	snR38	SIZ1	Q04195	904 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-GR1	Q12085	440 aa		0.86	□□□□□ -2.27
snR38	snR38	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	0.86	□□□□□ -2.27
snR38	snR38	TY1A-OL	Q92392	440 aa	Known RBP	0.86	□□□□□ -2.27
snR38	snR38	HIS5	P07172	385 aa		0.85	□□□□□ -2.27
snR38	snR38	PPR1	P07272	904 aa	Predicted RBP	0.85	□□□□□ -2.27
snR38	snR38	TIF1	P10081	395 aa	Known RBP	0.85	□□□□□ -2.27
snR38	snR38	YHL017W	P38745	532 aa		0.85	□□□□□ -2.27
snR38	snR38	CCT4	P39078	528 aa	Known RBP	0.85	□□□□□ -2.27
snR38	snR38	SLS1	P42900	643 aa		0.85	□□□□□ -2.27
snR38	snR38	YAF9	P53930	226 aa		0.85	□□□□□ -2.27
snR38	snR38	MUK1	Q02866	612 aa		0.85	□□□□□ -2.27
snR38	snR38	SEG1	Q04279	960 aa		0.85	□□□□□ -2.27
snR38	snR38	MRI1	Q06489	411 aa	Known RBP	0.85	□□□□□ -2.27
snR38	snR38	NEW1	Q08972	1196 aa	Known RBP	0.85	□□□□□ -2.27
snR38	snR38	APC11	Q12157	165 aa		0.85	□□□□□ -2.27
snR38	snR38	FLO10	P36170	1169 aa		0.84	□□□□□ -2.27
snR38	snR38	UBX7	P38349	436 aa		0.84	□□□□□ -2.27
snR38	snR38	LTP1	P40347	161 aa		0.84	□□□□□ -2.27
snR38	snR38	SAP155	P43612	1002 aa		0.84	□□□□□ -2.27
snR38	snR38	NET1	P47035	1189 aa		0.84	□□□□□ -2.27
snR38	snR38	ECM23	Q02710	187 aa		0.84	□□□□□ -2.27
snR38	snR38	RIM13	Q03792	727 aa		0.84	□□□□□ -2.27
snR38	snR38	RCL1	Q08096	367 aa	Predicted RBP	0.84	□□□□□ -2.27
snR38	snR38	SVS1	Q12254	260 aa		0.84	□□□□□ -2.27
snR38	snR38	SPO21	Q12411	609 aa		0.84	□□□□□ -2.27
snR38	snR38	MET6	P05694	767 aa	Known RBP	0.83	□□□□□ -2.28
snR38	snR38	ADY2	P25613	283 aa		0.83	□□□□□ -2.28
snR38	snR38	PEP7	P32609	515 aa		0.83	□□□□□ -2.28
snR38	snR38	XKS1	P42826	600 aa		0.83	□□□□□ -2.28
snR38	snR38	TAH11	P47112	604 aa		0.83	□□□□□ -2.28
snR38	snR38	VPS73	P53142	486 aa	Known RBP	0.83	□□□□□ -2.28
snR38	snR38	YNR063W	P53749	607 aa		0.83	□□□□□ -2.28
snR38	snR38	RKM2	Q03942	479 aa		0.83	□□□□□ -2.28
snR38	snR38	TPO1	Q07824	586 aa		0.83	□□□□□ -2.28
snR38	snR38	SUT2	Q12286	268 aa		0.83	□□□□□ -2.28
snR38	snR38	YLR149C	Q99296	730 aa		0.83	□□□□□ -2.28
snR38	snR38	COB	P00163	385 aa		0.82	□□□□□ -2.28
snR38	snR38	ALG7	P07286	448 aa		0.82	□□□□□ -2.28
snR38	snR38	SPO11	P23179	398 aa		0.82	□□□□□ -2.28
snR38	snR38	EXO5	P38289	585 aa		0.82	□□□□□ -2.28
snR38	snR38	NEM1	P38757	446 aa		0.82	□□□□□ -2.28
snR38	snR38	RVS167	P39743	482 aa	Known RBP	0.82	□□□□□ -2.28
snR38	snR38	RPN3	P40016	523 aa	Known RBP	0.82	□□□□□ -2.28
snR38	snR38	MND2	P40577	368 aa		0.82	□□□□□ -2.28
snR38	snR38	CHA4	P43634	648 aa		0.82	□□□□□ -2.28
snR38	snR38	BNA3	P47039	444 aa	Known RBP	0.82	□□□□□ -2.28
snR38	snR38	APM1	Q00776	475 aa	Predicted RBP	0.82	□□□□□ -2.28
snR38	snR38	MSC2	Q03455	724 aa		0.82	□□□□□ -2.28
snR38	snR38	UTP5	Q04177	643 aa	Known RBP	0.82	□□□□□ -2.28
snR38	snR38	GUP2	Q08929	609 aa		0.82	□□□□□ -2.28
snR38	snR38	RIB2	Q12362	591 aa	Known RBP	0.82	□□□□□ -2.28
snR38	snR38	KCS1	Q12494	1050 aa		0.82	□□□□□ -2.28
snR38	snR38	VMA4	P22203	233 aa	Known RBP	0.81	□□□□□ -2.28
snR38	snR38	CAD1	P24813	409 aa	Known RBP	0.81	□□□□□ -2.28
snR38	snR38	DMC1	P25453	334 aa		0.81	□□□□□ -2.28
snR38	snR38	KTR2	P33550	425 aa		0.81	□□□□□ -2.28
snR38	snR38	ADY3	Q07732	790 aa		0.81	□□□□□ -2.28
snR38	snR38	TRP4	P07285	380 aa	Predicted RBP	0.8	□□□□□ -2.28
snR38	snR38	HOM2	P13663	365 aa	Known RBP	0.8	□□□□□ -2.28
snR38	snR38	SEC23	P15303	768 aa	Known RBP	0.8	□□□□□ -2.28
snR38	snR38	SNF5	P18480	905 aa		0.8	□□□□□ -2.28
snR38	snR38	RPB10	P22139	70 aa		0.8	□□□□□ -2.28
snR38	snR38	KIN3	P22209	435 aa		0.8	□□□□□ -2.28
snR38	snR38	KIP1	P28742	1111 aa		0.8	□□□□□ -2.28
snR38	snR38	TGL4	P36165	910 aa		0.8	□□□□□ -2.28
snR38	snR38	NUT1	P53114	1132 aa		0.8	□□□□□ -2.28
snR38	snR38	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	0.8	□□□□□ -2.28	not detected
snR38	snR38	NPC2	Q12408	173 aa		0.8	□□□□□ -2.28
snR38	snR38	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	0.79	□□□□□ -2.28	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 107.9 ms