RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C ATF1P40353 525 aa1.16□□□□□ -2.22
NIP1YMR309C PBP1P53297 722 aaKnown RBP1.16□□□□□ -2.22
NIP1YMR309C YNR063WP53749 607 aa1.16□□□□□ -2.22
NIP1YMR309C RSM24Q03976 319 aa1.16□□□□□ -2.22
NIP1YMR309C PRP40P33203 583 aaKnown RBP1.15□□□□□ -2.23
NIP1YMR309C ERP5P38819 212 aa1.15□□□□□ -2.23
NIP1YMR309C PEX28P38848 579 aa1.15□□□□□ -2.23
NIP1YMR309C THI12P42883 340 aa1.15□□□□□ -2.23
NIP1YMR309C THI5P43534 340 aa1.15□□□□□ -2.23
NIP1YMR309C THI11P47183 340 aa1.15□□□□□ -2.23
NIP1YMR309C PHO23P50947 330 aa1.15□□□□□ -2.23
NIP1YMR309C YGL140CP53120 1219 aa1.15□□□□□ -2.23
NIP1YMR309C PEX13P80667 386 aa1.15□□□□□ -2.23
NIP1YMR309C KIN4Q01919 800 aa1.15□□□□□ -2.23
NIP1YMR309C SIZ1Q04195 904 aa1.15□□□□□ -2.23
NIP1YMR309C YLR224WQ05947 369 aa1.15□□□□□ -2.23
NIP1YMR309C THI13Q07748 340 aa1.15□□□□□ -2.23
NIP1YMR309C RSB1Q08417 382 aa1.15□□□□□ -2.23
NIP1YMR309C RIB2Q12362 591 aaKnown RBP1.15□□□□□ -2.23
NIP1YMR309C SPO21Q12411 609 aa1.15□□□□□ -2.23
NIP1YMR309C HEM13P11353 328 aaKnown RBP1.15□□□□□ -2.23
NIP1YMR309C CMP2P14747 604 aa1.15□□□□□ -2.23
NIP1YMR309C SEC23P15303 768 aaKnown RBP1.15□□□□□ -2.23
NIP1YMR309C KAR2P16474 682 aaKnown RBP1.15□□□□□ -2.23
NIP1YMR309C SQT1P35184 431 aa1.15□□□□□ -2.23
NIP1YMR309C OAR1P35731 278 aa1.15□□□□□ -2.23
NIP1YMR309C MSS4P38994 779 aa1.15□□□□□ -2.23
NIP1YMR309C MDJ2P42834 146 aa1.15□□□□□ -2.23
NIP1YMR309C IOC3P43596 787 aa1.15□□□□□ -2.23
NIP1YMR309C ULP1Q02724 621 aa1.15□□□□□ -2.23
NIP1YMR309C YPL260WQ08977 551 aa1.15□□□□□ -2.23
NIP1YMR309C HMI1Q12039 706 aa1.15□□□□□ -2.23
NIP1YMR309C FRT1Q99332 602 aa1.15□□□□□ -2.23
NIP1YMR309C VPS35P34110 944 aa1.14□□□□□ -2.23
NIP1YMR309C RFC5P38251 354 aa1.14□□□□□ -2.23
NIP1YMR309C DAK2P43550 591 aa1.14□□□□□ -2.23
NIP1YMR309C RSM26P47141 266 aa1.14□□□□□ -2.23
NIP1YMR309C YAP6Q03935 383 aa1.14□□□□□ -2.23
NIP1YMR309C NUT2Q06213 157 aa1.14□□□□□ -2.23
NIP1YMR309C ATG13Q06628 738 aa1.14□□□□□ -2.23
NIP1YMR309C NOP12Q08208 459 aaKnown RBP1.14□□□□□ -2.23
NIP1YMR309C PPM2Q08282 695 aa1.14□□□□□ -2.23
NIP1YMR309C PTC5Q12511 572 aa1.14□□□□□ -2.23
NIP1YMR309C TAF13P11747 167 aa1.14□□□□□ -2.23
NIP1YMR309C KIN2P13186 1147 aaKnown RBP1.14□□□□□ -2.23
NIP1YMR309C UGA4P32837 571 aa1.14□□□□□ -2.23
NIP1YMR309C MOH1P38191 138 aa1.14□□□□□ -2.23
NIP1YMR309C GPB2P39717 880 aa1.14□□□□□ -2.23
NIP1YMR309C YPL109CQ02981 657 aa1.14□□□□□ -2.23
NIP1YMR309C EST2Q06163 884 aa1.14□□□□□ -2.23
NIP1YMR309C OXR1Q08952 273 aa1.14□□□□□ -2.23
NIP1YMR309C EMC1P25574 760 aa1.13□□□□□ -2.23
NIP1YMR309C GCD6P32501 712 aaKnown RBP1.13□□□□□ -2.23
NIP1YMR309C ALG3P38179 458 aa1.13□□□□□ -2.23
NIP1YMR309C YHL050CP38721 697 aa1.13□□□□□ -2.23
NIP1YMR309C YHR219WP38900 624 aa1.13□□□□□ -2.23
NIP1YMR309C SIP5P40210 489 aaKnown RBP1.13□□□□□ -2.23
NIP1YMR309C MSC2Q03455 724 aa1.13□□□□□ -2.23
NIP1YMR309C ADI1Q03677 179 aa1.13□□□□□ -2.23
NIP1YMR309C DAL4Q04895 635 aa1.13□□□□□ -2.23
NIP1YMR309C PHO4P07270 312 aaKnown RBP1.13□□□□□ -2.23
NIP1YMR309C ENT3P47160 408 aa1.13□□□□□ -2.23
NIP1YMR309C EXG2P52911 562 aa1.13□□□□□ -2.23
NIP1YMR309C VTS1Q08831 523 aaKnown RBP RIP-Chip data1.13□□□□□ -2.23not detected
NIP1YMR309C SVS1Q12254 260 aa1.13□□□□□ -2.23
NIP1YMR309C PRE9P23638 258 aaKnown RBP1.12□□□□□ -2.23
NIP1YMR309C APL1P27351 700 aa1.12□□□□□ -2.23
NIP1YMR309C STM1P39015 273 aaKnown RBP1.12□□□□□ -2.23
NIP1YMR309C PLB1P39105 664 aa1.12□□□□□ -2.23
NIP1YMR309C ADY3Q07732 790 aa1.12□□□□□ -2.23
NIP1YMR309C DED1P06634 604 aaKnown RBP1.11□□□□□ -2.23
NIP1YMR309C HRR25P29295 494 aaKnown RBP1.11□□□□□ -2.23
NIP1YMR309C SLD2P34252 453 aa1.11□□□□□ -2.23
NIP1YMR309C RGD1P38339 666 aa1.11□□□□□ -2.23
NIP1YMR309C MND2P40577 368 aa1.11□□□□□ -2.23
NIP1YMR309C QRI1P43123 477 aaKnown RBP1.11□□□□□ -2.23
NIP1YMR309C YFL054CP43549 646 aa1.11□□□□□ -2.23
NIP1YMR309C CHA4P43634 648 aa1.11□□□□□ -2.23
NIP1YMR309C MET12P46151 657 aa1.11□□□□□ -2.23
NIP1YMR309C UBA2P52488 636 aa1.11□□□□□ -2.23
NIP1YMR309C GTF1P53260 183 aaPredicted RBP1.11□□□□□ -2.23
NIP1YMR309C MAP1Q01662 387 aaKnown RBP RIP-Chip data1.11□□□□□ -2.23 RIP-Chip
NIP1YMR309C HIS5P07172 385 aa1.11□□□□□ -2.23
NIP1YMR309C ACE2P21192 770 aa1.11□□□□□ -2.23
NIP1YMR309C SEC20P28791 383 aa1.11□□□□□ -2.23
NIP1YMR309C SSF1P38789 453 aaPredicted RBP1.11□□□□□ -2.23
NIP1YMR309C PIC2P40035 300 aa1.11□□□□□ -2.23
NIP1YMR309C RRT14P40470 206 aa1.11□□□□□ -2.23
NIP1YMR309C GCV2P49095 1034 aa1.11□□□□□ -2.23
NIP1YMR309C NPL3Q01560 414 aaKnown RBP RIP-Chip data1.11□□□□□ -2.23not detected
NIP1YMR309C TOS4Q06266 489 aa1.11□□□□□ -2.23
NIP1YMR309C TPO1Q07824 586 aa1.11□□□□□ -2.23
NIP1YMR309C YAP7Q08182 245 aa1.11□□□□□ -2.23
NIP1YMR309C AIM39Q08223 395 aa1.11□□□□□ -2.23
NIP1YMR309C ENB1Q08299 606 aa1.11□□□□□ -2.23
NIP1YMR309C HXK1P04806 485 aaKnown RBP1.1□□□□□ -2.23
NIP1YMR309C RPP2AP05319 106 aaKnown RBP1.1□□□□□ -2.23
NIP1YMR309C YER152CP10356 443 aa1.1□□□□□ -2.23
NIP1YMR309C PFK1P16861 987 aaKnown RBP1.1□□□□□ -2.23
NIP1YMR309C PEP7P32609 515 aa1.1□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 24.9 ms