RNA–Protein interactions for RNA: YLL040C

VPS13, Transcript of Protein involved in prospore membrane morphogenesis, yeast

Gene VPS13, Length 9,435 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS13	YLL040C	PPM2	Q08282	695 aa		2.6	□□□□□ -1.99
VPS13	YLL040C	HIF1	Q12373	385 aa		2.6	□□□□□ -1.99
VPS13	YLL040C	YKL023W	P36103	277 aa	Known RBP	2.6	□□□□□ -1.99
VPS13	YLL040C	PXR1	P53335	271 aa	Predicted RBP	2.6	□□□□□ -1.99
VPS13	YLL040C	YOL019W	Q08157	551 aa		2.6	□□□□□ -1.99
VPS13	YLL040C	PMR1	P13586	950 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	MCM4	P30665	933 aa	Known RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	SAP185	P40856	1058 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	GGA1	Q06336	557 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	TOP1	P04786	769 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	STE6	P12866	1290 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	NAT1	P12945	854 aa	Known RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	ILM1	P47155	203 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	ERO1	Q03103	563 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	ATG13	Q06628	738 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	NCA2	Q12374	616 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	PRT1	P06103	763 aa	Known RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	TAN1	P53072	289 aa	Predicted RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	SEN54	Q02825	467 aa	Predicted RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	SPO19	Q03029	223 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	ECI1	Q05871	280 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	TIF1	P10081	395 aa	Known RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	PFF1	P38244	976 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	YGR237C	P50089	785 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	RAD57	P25301	460 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	KTR2	P33550	425 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	MIP6	P38760	659 aa	Known RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	PUS2	P53167	370 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	BUL2	Q03758	920 aa	Known RBP	2.59	□□□□□ -1.99
VPS13	YLL040C	DON1	Q05610	365 aa		2.59	□□□□□ -1.99
VPS13	YLL040C	DCD1	P06773	312 aa		2.59	□□□□□ -2
VPS13	YLL040C	FUN12	P39730	1002 aa	Known RBP	2.59	□□□□□ -2
VPS13	YLL040C	UBP15	P50101	1230 aa		2.59	□□□□□ -2
VPS13	YLL040C	MSB4	Q12317	492 aa		2.59	□□□□□ -2
VPS13	YLL040C	YOR111W	Q99210	232 aa		2.59	□□□□□ -2
VPS13	YLL040C	PRP45	P28004	379 aa	Predicted RBP	2.59	□□□□□ -2
VPS13	YLL040C	ANP1	P32629	500 aa		2.59	□□□□□ -2
VPS13	YLL040C	TRM2	P33753	639 aa		2.59	□□□□□ -2
VPS13	YLL040C	DID4	P36108	232 aa		2.59	□□□□□ -2
VPS13	YLL040C	YIL001W	P40560	513 aa		2.59	□□□□□ -2
VPS13	YLL040C	SAD1	P43589	448 aa		2.59	□□□□□ -2
VPS13	YLL040C	ALE1	Q08548	619 aa		2.59	□□□□□ -2
VPS13	YLL040C	DIP2	Q12220	943 aa	Predicted RBP	2.59	□□□□□ -2
VPS13	YLL040C	PTK2	P47116	818 aa	Known RBP	2.59	□□□□□ -2
VPS13	YLL040C	NMA2	P53204	395 aa		2.59	□□□□□ -2
VPS13	YLL040C	YGR122W	P53272	402 aa		2.59	□□□□□ -2
VPS13	YLL040C	COQ1	P18900	473 aa		2.58	□□□□□ -2
VPS13	YLL040C	PRK1	P40494	810 aa		2.58	□□□□□ -2
VPS13	YLL040C	SPO21	Q12411	609 aa		2.58	□□□□□ -2
VPS13	YLL040C	PTC5	Q12511	572 aa		2.58	□□□□□ -2
VPS13	YLL040C	GSY1	P23337	708 aa		2.58	□□□□□ -2
VPS13	YLL040C	MIG2	P53035	382 aa		2.58	□□□□□ -2
VPS13	YLL040C	ALD6	P54115	500 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	HIS4	P00815	799 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	KAR3	P17119	729 aa		2.58	□□□□□ -2
VPS13	YLL040C	RPC53	P25441	422 aa		2.58	□□□□□ -2
VPS13	YLL040C	YGL140C	P53120	1219 aa		2.58	□□□□□ -2
VPS13	YLL040C	RPN7	Q06103	429 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	YAP7	Q08182	245 aa		2.58	□□□□□ -2
VPS13	YLL040C	TY1B-A	O13527	1196 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	PPR1	P07272	904 aa	Predicted RBP	2.58	□□□□□ -2
VPS13	YLL040C	HOS4	P40480	1083 aa		2.58	□□□□□ -2
VPS13	YLL040C	FYV8	P46949	817 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	NUT1	P53114	1132 aa		2.58	□□□□□ -2
VPS13	YLL040C	SOL4	P53315	255 aa		2.58	□□□□□ -2
VPS13	YLL040C	ATG16	Q03818	150 aa		2.58	□□□□□ -2
VPS13	YLL040C	ACK1	Q07622	623 aa	Predicted RBP	2.58	□□□□□ -2
VPS13	YLL040C	TMA16	Q08687	178 aa		2.58	□□□□□ -2
VPS13	YLL040C	TRS33	Q99394	268 aa		2.58	□□□□□ -2
VPS13	YLL040C	YMC2	P38087	329 aa		2.58	□□□□□ -2
VPS13	YLL040C	OYE2	Q03558	400 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	NOB1	Q08444	459 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	VMA4	P22203	233 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	NAM7	P30771	971 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	TOS1	P38288	455 aa		2.58	□□□□□ -2
VPS13	YLL040C	AKR1	P39010	764 aa		2.58	□□□□□ -2
VPS13	YLL040C	MFM1	Q02783	413 aa		2.58	□□□□□ -2
VPS13	YLL040C	IMH1	Q06704	911 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	CMS1	Q07897	291 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	FRD1	P32614	470 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	SPT8	P38915	602 aa		2.58	□□□□□ -2
VPS13	YLL040C	YJL171C	P46992	396 aa		2.58	□□□□□ -2
VPS13	YLL040C	SDA1	P53313	767 aa	Known RBP	2.58	□□□□□ -2
VPS13	YLL040C	YDL073W	Q07454	984 aa		2.58	□□□□□ -2
VPS13	YLL040C	PDB1	P32473	366 aa	Known RBP	2.57	□□□□□ -2
VPS13	YLL040C	YNL193W	P53870	558 aa		2.57	□□□□□ -2
VPS13	YLL040C	CSR1	Q06705	408 aa	Known RBP	2.57	□□□□□ -2
VPS13	YLL040C	SNX3	Q08826	162 aa	Known RBP	2.57	□□□□□ -2
VPS13	YLL040C	PRP22	P24384	1145 aa	Known RBP	2.57	□□□□□ -2
VPS13	YLL040C	SRL3	P36167	246 aa		2.57	□□□□□ -2
VPS13	YLL040C	ERT1	P38140	529 aa		2.57	□□□□□ -2
VPS13	YLL040C	TOF1	P53840	1238 aa		2.57	□□□□□ -2
VPS13	YLL040C	GIS3	Q12418	502 aa		2.57	□□□□□ -2
VPS13	YLL040C	KDX1	P36005	433 aa		2.57	□□□□□ -2
VPS13	YLL040C	LAS1	P36146	502 aa	Predicted RBP	2.57	□□□□□ -2
VPS13	YLL040C	STT3	P39007	718 aa	Known RBP	2.57	□□□□□ -2
VPS13	YLL040C	YAP5	P40574	245 aa		2.57	□□□□□ -2
VPS13	YLL040C	PRP31	P49704	494 aa	Predicted RBP	2.57	□□□□□ -2
VPS13	YLL040C	FCP1	Q03254	732 aa		2.57	□□□□□ -2
VPS13	YLL040C	NBL1	Q3E7Y6	73 aa		2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 20.2 ms