RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	HEM13	P11353	328 aa	Known RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	DIT1	P21623	536 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	VBA5	P36172	582 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	AMN1	P38285	549 aa	Predicted RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	POL5	P39985	1022 aa	Known RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	MSH4	P40965	878 aa	Predicted RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	HUL4	P40985	892 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	LSB6	P42951	607 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	MTR4	P47047	1073 aa	Known RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	YNR065C	P53751	1116 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	ROD1	Q02805	837 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	YMR265C	Q03508	461 aa	Known RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	YLR225C	Q05948	407 aa	Known RBP	4.96	□□□□□ -1.62
UBX5	YDR330W	EAF1	Q06337	982 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	FMP25	Q08023	583 aa		4.96	□□□□□ -1.62
UBX5	YDR330W	YOR093C	Q12275	1648 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	DOP1	Q03921	1698 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	CIT1	P00890	479 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	DED1	P06634	604 aa	Known RBP	4.95	□□□□□ -1.62
UBX5	YDR330W	TRK1	P12685	1235 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	PRP9	P19736	530 aa	Known RBP	4.95	□□□□□ -1.62
UBX5	YDR330W	ARE1	P25628	610 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	TFA2	P36145	328 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	GUP1	P53154	560 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	UTP22	P53254	1237 aa	Predicted RBP	4.95	□□□□□ -1.62
UBX5	YDR330W	REC8	Q12188	680 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	RKM4	Q12504	494 aa		4.95	□□□□□ -1.62
UBX5	YDR330W	PDR5	P33302	1511 aa	Known RBP	4.95	□□□□□ -1.62
UBX5	YDR330W	CHC1	P22137	1653 aa	Known RBP	4.94	□□□□□ -1.62
UBX5	YDR330W	CAN1	P04817	590 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	INO1	P11986	533 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	SYP1	P25623	870 aa	Known RBP	4.94	□□□□□ -1.62
UBX5	YDR330W	MKK2	P32491	506 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	SCT1	P32784	759 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
UBX5	YDR330W	ADD66	P36040	267 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	MSC7	P38694	644 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	NEO1	P40527	1151 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	LEM3	P42838	414 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	BRE2	P43132	505 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	NAM8	Q00539	523 aa	Known RBP	4.94	□□□□□ -1.62
UBX5	YDR330W	YIG1	Q08956	461 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	TY1A-BL	Q12266	440 aa		4.94	□□□□□ -1.62
UBX5	YDR330W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-DR6	P0CX70	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-ER1	P0CX71	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-LR2	P0CX72	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-PL	P0CX73	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-JR1	P0CX74	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-LR3	P0CX75	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-ML2	P0CX76	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	YKL107W	P34251	309 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	MOT2	P34909	587 aa	Known RBP	4.93	□□□□□ -1.62
UBX5	YDR330W	ARL1	P38116	183 aa	Known RBP	4.93	□□□□□ -1.62
UBX5	YDR330W	PRK1	P40494	810 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	YJR142W	P47173	342 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TIF35	Q04067	274 aa	Known RBP	4.93	□□□□□ -1.62
UBX5	YDR330W	ESC2	Q06340	456 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-GR1	Q12085	440 aa		4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.93	□□□□□ -1.62
UBX5	YDR330W	TY1A-OL	Q92392	440 aa	Known RBP	4.93	□□□□□ -1.62
UBX5	YDR330W	TOM20	P35180	183 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	CNN1	P43618	361 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	PFD1	P46988	109 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	UTP8	P53276	713 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	CUZ1	P53899	274 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	HAS1	Q03532	505 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	UTP5	Q04177	643 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	YDR461C-A	Q2V2P7	80 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	TRM3	Q07527	1436 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	ERR1	P0CX10	437 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	ERR2	P0CX11	437 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	SSB1	P11484	613 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	DBP5	P20449	482 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	MCM7	P38132	845 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	PAF1	P38351	445 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	NEM1	P38757	446 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	SSB2	P40150	613 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	RKM2	Q03942	479 aa		4.92	□□□□□ -1.62
UBX5	YDR330W	YDL124W	Q07551	312 aa	Known RBP	4.92	□□□□□ -1.62
UBX5	YDR330W	MRP10	O75012	95 aa		4.91	□□□□□ -1.62
UBX5	YDR330W	ALR2	P43553	858 aa		4.91	□□□□□ -1.62
UBX5	YDR330W	YGL176C	P46945	554 aa		4.91	□□□□□ -1.62
UBX5	YDR330W	HNT2	P49775	206 aa		4.91	□□□□□ -1.62
UBX5	YDR330W	ADE12	P80210	433 aa	Known RBP	4.91	□□□□□ -1.62
UBX5	YDR330W	RAT1	Q02792	1006 aa	Known RBP	4.91	□□□□□ -1.62
UBX5	YDR330W	TAF8	Q03750	510 aa		4.91	□□□□□ -1.62
UBX5	YDR330W	TY1A-DR2	Q03964	440 aa	Known RBP	4.91	□□□□□ -1.62
UBX5	YDR330W	NOP14	Q99207	810 aa	Known RBP	4.91	□□□□□ -1.62
UBX5	YDR330W	DRS2	P39524	1355 aa		4.91	□□□□□ -1.62
UBX5	YDR330W	VMR1	P38735	1592 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	GRX4	P32642	244 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	SLS1	P42900	643 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	ROG3	P43602	733 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	LYS5	P50113	272 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	TPO2	P53283	614 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	TY1A-MR1	Q04215	440 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	AOS1	Q06624	347 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	UBX5	Q06682	500 aa		4.9	□□□□□ -1.63
UBX5	YDR330W	NUP188	P52593	1655 aa	Known RBP	4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 75.3 ms