RNA–Protein interactions for RNA: YDL091C

UBX3, Transcript of Subunit of the DSC ubiquitin ligase complex, yeast

Gene UBX3, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX3	YDL091C	RAD27	P26793	382 aa		5.03	□□□□□ -1.6
UBX3	YDL091C	MNR2	P35724	969 aa		5.03	□□□□□ -1.6
UBX3	YDL091C	YKL222C	P35995	705 aa		5.03	□□□□□ -1.6
UBX3	YDL091C	CNN1	P43618	361 aa		5.03	□□□□□ -1.6
UBX3	YDL091C	ESC8	Q08119	714 aa		5.03	□□□□□ -1.6
UBX3	YDL091C	CDC34	P14682	295 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	PET112	P33893	541 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	RER2	P35196	286 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	GPB2	P39717	880 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	TNA1	P53322	534 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	HOS3	Q02959	697 aa	Known RBP	5.02	□□□□□ -1.61
UBX3	YDL091C	RSC58	Q07979	502 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	SPO21	Q12411	609 aa		5.02	□□□□□ -1.61
UBX3	YDL091C	COQ4	O13525	335 aa		5.01	□□□□□ -1.61
UBX3	YDL091C	SNF5	P18480	905 aa		5.01	□□□□□ -1.61
UBX3	YDL091C	MET10	P39692	1035 aa		5.01	□□□□□ -1.61
UBX3	YDL091C	MPH1	P40562	993 aa		5.01	□□□□□ -1.61
UBX3	YDL091C	TAF1	P46677	1066 aa		5.01	□□□□□ -1.61
UBX3	YDL091C	RCL1	Q08096	367 aa	Predicted RBP	5.01	□□□□□ -1.61
UBX3	YDL091C	CCZ1	P38273	704 aa		5	□□□□□ -1.61
UBX3	YDL091C	SVF1	Q05515	481 aa		5	□□□□□ -1.61
UBX3	YDL091C	NBA1	Q08229	501 aa	Known RBP	5	□□□□□ -1.61
UBX3	YDL091C	MLS1	P30952	554 aa		4.99	□□□□□ -1.61
UBX3	YDL091C	THI80	P35202	319 aa		4.99	□□□□□ -1.61
UBX3	YDL091C	PIK1	P39104	1066 aa		4.99	□□□□□ -1.61
UBX3	YDL091C	EEB1	Q02891	456 aa		4.99	□□□□□ -1.61
UBX3	YDL091C	TIF35	Q04067	274 aa	Known RBP	4.99	□□□□□ -1.61
UBX3	YDL091C	YER152C	P10356	443 aa		4.98	□□□□□ -1.61
UBX3	YDL091C	AIM26	P32858	118 aa		4.98	□□□□□ -1.61
UBX3	YDL091C	HNT2	P49775	206 aa		4.98	□□□□□ -1.61
UBX3	YDL091C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
UBX3	YDL091C	TRP2	P00899	507 aa	Known RBP	4.97	□□□□□ -1.61
UBX3	YDL091C	NAP1	P25293	417 aa	Known RBP	4.97	□□□□□ -1.61
UBX3	YDL091C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
UBX3	YDL091C	LYP1	P32487	611 aa		4.97	□□□□□ -1.61
UBX3	YDL091C	GIP4	P39732	760 aa		4.97	□□□□□ -1.61
UBX3	YDL091C	ENV11	P53246	860 aa		4.97	□□□□□ -1.61
UBX3	YDL091C	YDL177C	Q12257	170 aa		4.97	□□□□□ -1.61
UBX3	YDL091C	SPS1	P08458	490 aa		4.96	□□□□□ -1.62
UBX3	YDL091C	FOL2	P51601	243 aa	Known RBP	4.96	□□□□□ -1.62
UBX3	YDL091C	YGR053C	P53234	283 aa		4.96	□□□□□ -1.62
UBX3	YDL091C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
UBX3	YDL091C	GNT1	Q12096	491 aa		4.96	□□□□□ -1.62
UBX3	YDL091C	TYW3	P53177	273 aa		4.95	□□□□□ -1.62
UBX3	YDL091C	SNU71	P53207	620 aa	Known RBP	4.95	□□□□□ -1.62
UBX3	YDL091C	CLN2	P20438	545 aa		4.94	□□□□□ -1.62
UBX3	YDL091C	MCM7	P38132	845 aa		4.94	□□□□□ -1.62
UBX3	YDL091C	ETP1	P38748	585 aa	Known RBP	4.94	□□□□□ -1.62
UBX3	YDL091C	SEC26	P41810	973 aa	Known RBP	4.94	□□□□□ -1.62
UBX3	YDL091C	YFL054C	P43549	646 aa		4.94	□□□□□ -1.62
UBX3	YDL091C	RSB1	Q08417	382 aa		4.94	□□□□□ -1.62
UBX3	YDL091C	PIN2	Q12057	282 aa		4.94	□□□□□ -1.62
UBX3	YDL091C	PRP6	P19735	899 aa	Predicted RBP	4.93	□□□□□ -1.62
UBX3	YDL091C	MRPL22	P53881	309 aa		4.93	□□□□□ -1.62
UBX3	YDL091C	VPS16	Q03308	798 aa		4.93	□□□□□ -1.62
UBX3	YDL091C	RKM4	Q12504	494 aa		4.93	□□□□□ -1.62
UBX3	YDL091C	ABZ1	P37254	787 aa	Predicted RBP	4.92	□□□□□ -1.62
UBX3	YDL091C	FAA4	P47912	694 aa	Known RBP	4.92	□□□□□ -1.62
UBX3	YDL091C	ATG13	Q06628	738 aa		4.92	□□□□□ -1.62
UBX3	YDL091C	RPL11A	P0C0W9	174 aa	Known RBP	4.91	□□□□□ -1.62
UBX3	YDL091C	INO1	P11986	533 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	BAS1	P22035	811 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	PNT1	P38969	423 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	MAD1	P40957	749 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	SNO2	P53823	222 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	YPL066W	Q12194	479 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	RPL11B	Q3E757	174 aa	Predicted RBP	4.91	□□□□□ -1.62
UBX3	YDL091C	DBP2	P24783	546 aa	Known RBP	4.91	□□□□□ -1.62
UBX3	YDL091C	FLR1	P38124	548 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	GEM1	P39722	662 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	MXR1	P40029	184 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	GDE1	Q02979	1223 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	SPO20	Q04359	397 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	ACM1	Q08981	209 aa		4.91	□□□□□ -1.62
UBX3	YDL091C	SLA2	P33338	968 aa		4.9	□□□□□ -1.63
UBX3	YDL091C	MOT2	P34909	587 aa	Known RBP	4.9	□□□□□ -1.63
UBX3	YDL091C	PAM1	P37304	830 aa	Known RBP	4.9	□□□□□ -1.63
UBX3	YDL091C	JIP5	Q06214	492 aa	Predicted RBP	4.9	□□□□□ -1.63
UBX3	YDL091C	SPP382	Q06411	708 aa	Predicted RBP	4.9	□□□□□ -1.63
UBX3	YDL091C	YKL107W	P34251	309 aa		4.89	□□□□□ -1.63
UBX3	YDL091C	UGA2	P38067	497 aa		4.89	□□□□□ -1.63
UBX3	YDL091C	RFC5	P38251	354 aa		4.89	□□□□□ -1.63
UBX3	YDL091C	AIM3	P38266	947 aa	Known RBP	4.89	□□□□□ -1.63
UBX3	YDL091C	SIP5	P40210	489 aa	Known RBP	4.89	□□□□□ -1.63
UBX3	YDL091C	YGL176C	P46945	554 aa		4.89	□□□□□ -1.63
UBX3	YDL091C	RIM8	P53179	542 aa		4.89	□□□□□ -1.63
UBX3	YDL091C	YLR225C	Q05948	407 aa	Known RBP	4.89	□□□□□ -1.63
UBX3	YDL091C	SOD2	P00447	233 aa		4.88	□□□□□ -1.63
UBX3	YDL091C	SNF7	P39929	240 aa	Known RBP	4.88	□□□□□ -1.63
UBX3	YDL091C	RRT14	P40470	206 aa		4.88	□□□□□ -1.63
UBX3	YDL091C	KRI1	P42846	591 aa	Known RBP	4.88	□□□□□ -1.63
UBX3	YDL091C	RSM24	Q03976	319 aa		4.88	□□□□□ -1.63
UBX3	YDL091C	SGD1	Q06132	899 aa		4.88	□□□□□ -1.63
UBX3	YDL091C	SVS1	Q12254	260 aa		4.88	□□□□□ -1.63
UBX3	YDL091C	RIB2	Q12362	591 aa	Known RBP	4.88	□□□□□ -1.63
UBX3	YDL091C	CYC1	P00044	109 aa	Predicted RBP	4.87	□□□□□ -1.63
UBX3	YDL091C	THS1	P04801	734 aa	Known RBP	4.87	□□□□□ -1.63
UBX3	YDL091C	ACE2	P21192	770 aa		4.87	□□□□□ -1.63
UBX3	YDL091C	AGP1	P25376	633 aa		4.87	□□□□□ -1.63
UBX3	YDL091C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 49.6 ms