RNA–Protein interactions for RNA: ENST00000641247.1

PHGDH-212, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-212ENST00000641247 C10orf71Q711Q0 1435 aa13.75□□□□□ -0.21
PHGDH-212ENST00000641247 HSPA1AP0DMV8 641 aaKnown RBP13.75□□□□□ -0.21
PHGDH-212ENST00000641247 HSPA1BP0DMV9 641 aaKnown RBP13.75□□□□□ -0.21
PHGDH-212ENST00000641247 HMGB2P26583 209 aaKnown RBP13.75□□□□□ -0.21
PHGDH-212ENST00000641247 C16orf71Q8IYS4 520 aaPredicted RBP13.75□□□□□ -0.21
PHGDH-212ENST00000641247 ARHGEF1Q92888 912 aaKnown RBP13.75□□□□□ -0.21
PHGDH-212ENST00000641247 CARD11Q9BXL7 1154 aa13.75□□□□□ -0.21
PHGDH-212ENST00000641247 ATG3Q9NT62 314 aa13.75□□□□□ -0.21
PHGDH-212ENST00000641247 RTL1A6NKG5 1358 aa13.74□□□□□ -0.21
PHGDH-212ENST00000641247 GYS1P13807 737 aa13.74□□□□□ -0.21
PHGDH-212ENST00000641247 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
PHGDH-212ENST00000641247 MAP2P11137 1827 aaKnown RBP13.74□□□□□ -0.21
PHGDH-212ENST00000641247 N4BP2Q86UW6 1770 aaPredicted RBP13.73□□□□□ -0.21
PHGDH-212ENST00000641247 TMF1P82094 1093 aa13.73□□□□□ -0.21
PHGDH-212ENST00000641247 TRAPPC3LQ5T215 181 aa13.73□□□□□ -0.21
PHGDH-212ENST00000641247 NLGN1Q8N2Q7 840 aa13.73□□□□□ -0.21
PHGDH-212ENST00000641247 TESK2Q96S53 571 aa13.73□□□□□ -0.21
PHGDH-212ENST00000641247 INSRP06213 1382 aa13.72□□□□□ -0.21
PHGDH-212ENST00000641247 DCAF5Q96JK2 942 aa13.72□□□□□ -0.21
PHGDH-212ENST00000641247 RNF181Q9P0P0 153 aa13.72□□□□□ -0.21
PHGDH-212ENST00000641247 CCDC87Q9NVE4 849 aa13.71□□□□□ -0.21
PHGDH-212ENST00000641247 CHRNA5P30532 468 aa13.7□□□□□ -0.22
PHGDH-212ENST00000641247 SMC1BQ8NDV3 1235 aa13.7□□□□□ -0.22
PHGDH-212ENST00000641247 TMOD3Q9NYL9 352 aa13.7□□□□□ -0.22
PHGDH-212ENST00000641247 PIM2Q9P1W9 311 aa13.7□□□□□ -0.22
PHGDH-212ENST00000641247 RTCBQ9Y3I0 505 aaKnown RBP13.7□□□□□ -0.22
PHGDH-212ENST00000641247 EMILIN1Q9Y6C2 1016 aa13.7□□□□□ -0.22
PHGDH-212ENST00000641247 KIF13BQ9NQT8 1826 aa13.69□□□□□ -0.22
PHGDH-212ENST00000641247 KDM2BQ8NHM5 1336 aa13.69□□□□□ -0.22
PHGDH-212ENST00000641247 KDRP35968 1356 aa13.69□□□□□ -0.22
PHGDH-212ENST00000641247 PLEKHG2Q9H7P9 1386 aa13.69□□□□□ -0.22
PHGDH-212ENST00000641247 SMG6Q86US8 1419 aaKnown RBP13.68□□□□□ -0.22
PHGDH-212ENST00000641247 PHKG2P15735 406 aa13.68□□□□□ -0.22
PHGDH-212ENST00000641247 DDR1Q08345 913 aa13.68□□□□□ -0.22
PHGDH-212ENST00000641247 DALRD3Q5D0E6 543 aaKnown RBP13.68□□□□□ -0.22
PHGDH-212ENST00000641247 PARP3Q9Y6F1 533 aa13.68□□□□□ -0.22
PHGDH-212ENST00000641247 ITGB4P16144 1822 aa13.68□□□□□ -0.22
PHGDH-212ENST00000641247 ST20-MTHFSA0A0A6YYL1 179 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 POTECB2RU33 542 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 RPS6KA4O75676 772 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 SLC34A2O95436 690 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 RASSF7Q02833 373 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 FKBP8Q14318 412 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 SRP68Q9UHB9 627 aaKnown RBP13.67□□□□□ -0.22
PHGDH-212ENST00000641247 PCNTO95613 3336 aa13.67□□□□□ -0.22
PHGDH-212ENST00000641247 NCAPD2Q15021 1401 aa13.66□□□□□ -0.22
PHGDH-212ENST00000641247 RC3H1Q5TC82 1133 aaKnown RBP13.66□□□□□ -0.22
PHGDH-212ENST00000641247 EYA1Q99502 592 aa13.66□□□□□ -0.22
PHGDH-212ENST00000641247 SPG7Q9UQ90 795 aa13.66□□□□□ -0.22
PHGDH-212ENST00000641247 FLT4P35916 1363 aa13.66□□□□□ -0.22
PHGDH-212ENST00000641247 RFC4P35249 363 aa13.65□□□□□ -0.22
PHGDH-212ENST00000641247 RBM42Q9BTD8 480 aaKnown RBP13.65□□□□□ -0.22
PHGDH-212ENST00000641247 C4AP0C0L4 1744 aa13.64□□□□□ -0.23
PHGDH-212ENST00000641247 ADRA2BP18089 450 aa13.64□□□□□ -0.23
PHGDH-212ENST00000641247 IFNL2Q8IZJ0 200 aa13.64□□□□□ -0.23
PHGDH-212ENST00000641247 TONSLQ96HA7 1378 aa13.63□□□□□ -0.23
PHGDH-212ENST00000641247 GLTPD2A6NH11 291 aa13.63□□□□□ -0.23
PHGDH-212ENST00000641247 CARD14Q9BXL6 1004 aa13.63□□□□□ -0.23
PHGDH-212ENST00000641247 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.63□□□□□ -0.23
PHGDH-212ENST00000641247 BRCA1P38398 1863 aaKnown RBP13.63□□□□□ -0.23
PHGDH-212ENST00000641247 CNTNAP4Q9C0A0 1308 aa13.63□□□□□ -0.23
PHGDH-212ENST00000641247 PKD1L3Q7Z443 1732 aa13.62□□□□□ -0.23
PHGDH-212ENST00000641247 VEGFAP15692 232 aaPredicted RBP13.62□□□□□ -0.23
PHGDH-212ENST00000641247 TM4SF1P30408 202 aa13.62□□□□□ -0.23
PHGDH-212ENST00000641247 KDM6AO15550 1401 aaPredicted RBP13.62□□□□□ -0.23
PHGDH-212ENST00000641247 KIF24Q5T7B8 1368 aa13.61□□□□□ -0.23
PHGDH-212ENST00000641247 POLRMTO00411 1230 aaKnown RBP13.61□□□□□ -0.23
PHGDH-212ENST00000641247 FOXN1O15353 648 aa13.61□□□□□ -0.23
PHGDH-212ENST00000641247 PPM1GO15355 546 aaPredicted RBP13.61□□□□□ -0.23
PHGDH-212ENST00000641247 MKRN1Q9UHC7 482 aaKnown RBP13.61□□□□□ -0.23
PHGDH-212ENST00000641247 WASHC2AQ641Q2 1341 aa13.6□□□□□ -0.23
PHGDH-212ENST00000641247 USP42Q9H9J4 1324 aaKnown RBP13.6□□□□□ -0.23
PHGDH-212ENST00000641247 POTEIP0CG38 1075 aa13.59□□□□□ -0.23
PHGDH-212ENST00000641247 POTEJP0CG39 1038 aa13.59□□□□□ -0.23
PHGDH-212ENST00000641247 CRKLP46109 303 aaKnown RBP13.59□□□□□ -0.23
PHGDH-212ENST00000641247 ERVV-2B6SEH9 535 aa13.58□□□□□ -0.24
PHGDH-212ENST00000641247 NFKBIEO00221 500 aa13.58□□□□□ -0.24
PHGDH-212ENST00000641247 LMNB1P20700 586 aa13.58□□□□□ -0.24
PHGDH-212ENST00000641247 INTS5Q6P9B9 1019 aaKnown RBP13.58□□□□□ -0.24
PHGDH-212ENST00000641247 ARFGEF1Q9Y6D6 1849 aa13.57□□□□□ -0.24
PHGDH-212ENST00000641247 PTCD1O75127 700 aaKnown RBP13.57□□□□□ -0.24
PHGDH-212ENST00000641247 TNRC6CQ9HCJ0 1690 aaKnown RBP13.56□□□□□ -0.24
PHGDH-212ENST00000641247 EIF4A2Q14240 407 aaKnown RBP13.56□□□□□ -0.24
PHGDH-212ENST00000641247 USPL1Q5W0Q7 1092 aa13.56□□□□□ -0.24
PHGDH-212ENST00000641247 POLKQ9UBT6 870 aa13.56□□□□□ -0.24
PHGDH-212ENST00000641247 ZC3H4Q9UPT8 1303 aaKnown RBP13.56□□□□□ -0.24
PHGDH-212ENST00000641247 NFIXQ14938 502 aa13.55□□□□□ -0.24
PHGDH-212ENST00000641247 CREBZFQ9NS37 354 aa13.55□□□□□ -0.24
PHGDH-212ENST00000641247 SBF1O95248 1867 aa13.55□□□□□ -0.24
PHGDH-212ENST00000641247 MYH14Q7Z406 1995 aaKnown RBP13.54□□□□□ -0.24
PHGDH-212ENST00000641247 CABP4P57796 275 aa13.54□□□□□ -0.24
PHGDH-212ENST00000641247 NFATC2IPQ8NCF5 419 aa13.54□□□□□ -0.24
PHGDH-212ENST00000641247 BCL2L12Q9HB09 334 aa13.54□□□□□ -0.24
PHGDH-212ENST00000641247 PRDM10Q9NQV6 1147 aa13.54□□□□□ -0.24
PHGDH-212ENST00000641247 FAM161AQ3B820 660 aa13.53□□□□□ -0.24
PHGDH-212ENST00000641247 COL5A3P25940 1745 aaPredicted RBP13.53□□□□□ -0.24
PHGDH-212ENST00000641247 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
PHGDH-212ENST00000641247 DNAJC10Q8IXB1 793 aa13.52□□□□□ -0.25
PHGDH-212ENST00000641247 TTLL6Q8N841 843 aa13.52□□□□□ -0.25
PHGDH-212ENST00000641247 CARMIL3Q8ND23 1372 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms