RNA–Protein interactions for RNA: ENST00000637667.1

CLN6-222, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 874 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-222ENST00000637667 ATP6V1AP38606 617 aa27.31■■□□□ 1.96
CLN6-222ENST00000637667 GPR162Q16538 588 aa27.31■■□□□ 1.96
CLN6-222ENST00000637667 NLGN2Q8NFZ4 835 aa27.31■■□□□ 1.96
CLN6-222ENST00000637667 KDRP35968 1356 aa27.31■■□□□ 1.96
CLN6-222ENST00000637667 MTHFSP49914 203 aa27.3■■□□□ 1.96
CLN6-222ENST00000637667 SMIM5Q71RC9 77 aa27.3■■□□□ 1.96
CLN6-222ENST00000637667 KDM6AO15550 1401 aaPredicted RBP27.3■■□□□ 1.96
CLN6-222ENST00000637667 SSFA2P28290 1259 aa27.29■■□□□ 1.96
CLN6-222ENST00000637667 C1orf141Q5JVX7 400 aa27.29■■□□□ 1.96
CLN6-222ENST00000637667 CABP4P57796 275 aa27.28■■□□□ 1.96
CLN6-222ENST00000637667 CC2D1BQ5T0F9 858 aaKnown RBP27.28■■□□□ 1.96
CLN6-222ENST00000637667 UTRNP46939 3433 aa27.28■■□□□ 1.96
CLN6-222ENST00000637667 GNPATO15228 680 aa27.27■■□□□ 1.96
CLN6-222ENST00000637667 PELP1Q8IZL8 1130 aaKnown RBP27.25■■□□□ 1.95
CLN6-222ENST00000637667 SLC4A9Q96Q91 983 aa27.25■■□□□ 1.95
CLN6-222ENST00000637667 RBM42Q9BTD8 480 aaKnown RBP27.25■■□□□ 1.95
CLN6-222ENST00000637667 UBR3Q6ZT12 1888 aa27.25■■□□□ 1.95
CLN6-222ENST00000637667 NPC1L1Q9UHC9 1359 aa27.22■■□□□ 1.95
CLN6-222ENST00000637667 CD2APQ9Y5K6 639 aa27.22■■□□□ 1.95
CLN6-222ENST00000637667 ZNF784Q8NCA9 323 aaPredicted RBP27.2■■□□□ 1.94
CLN6-222ENST00000637667 NFATC2IPQ8NCF5 419 aa27.2■■□□□ 1.94
CLN6-222ENST00000637667 DIAPH1O60610 1272 aaKnown RBP27.19■■□□□ 1.94
CLN6-222ENST00000637667 HMOX1P09601 288 aa27.19■■□□□ 1.94
CLN6-222ENST00000637667 AKAP4Q5JQC9 854 aa27.19■■□□□ 1.94
CLN6-222ENST00000637667 RC3H1Q5TC82 1133 aaKnown RBP27.18■■□□□ 1.94
CLN6-222ENST00000637667 RTCBQ9Y3I0 505 aaKnown RBP27.18■■□□□ 1.94
CLN6-222ENST00000637667 YBX3P16989 372 aaKnown RBP eCLIP27.17■■□□□ 1.941e-7■■□□□ 13.8
CLN6-222ENST00000637667 CHD4Q14839 1912 aa27.17■■□□□ 1.94
CLN6-222ENST00000637667 CNTNAP4Q9C0A0 1308 aa27.16■■□□□ 1.94
CLN6-222ENST00000637667 PTCD1O75127 700 aaKnown RBP27.16■■□□□ 1.94
CLN6-222ENST00000637667 CNGB1Q14028 1251 aaPredicted RBP27.16■■□□□ 1.94
CLN6-222ENST00000637667 ZNF831Q5JPB2 1677 aa27.15■■□□□ 1.94
CLN6-222ENST00000637667 TRAPPC3LQ5T215 181 aa27.15■■□□□ 1.94
CLN6-222ENST00000637667 GRIN3BO60391 1043 aa27.14■■□□□ 1.94
CLN6-222ENST00000637667 ADRA2BP18089 450 aa27.14■■□□□ 1.94
CLN6-222ENST00000637667 GOLGB1Q14789 3259 aaKnown RBP27.13■■□□□ 1.93
CLN6-222ENST00000637667 RPS6KA4O75676 772 aa27.12■■□□□ 1.93
CLN6-222ENST00000637667 LGR6Q9HBX8 967 aa27.12■■□□□ 1.93
CLN6-222ENST00000637667 ARHGEF1Q92888 912 aaKnown RBP27.11■■□□□ 1.93
CLN6-222ENST00000637667 SLC52A2Q9HAB3 445 aa27.11■■□□□ 1.93
CLN6-222ENST00000637667 RNMTO43148 476 aaKnown RBP27.1■■□□□ 1.93
CLN6-222ENST00000637667 MMP10P09238 476 aa27.1■■□□□ 1.93
CLN6-222ENST00000637667 MTHFSDQ2M296 383 aaKnown RBP27.1■■□□□ 1.93
CLN6-222ENST00000637667 COL3A1P02461 1466 aaPredicted RBP27.1■■□□□ 1.93
CLN6-222ENST00000637667 COL5A3P25940 1745 aaPredicted RBP27.08■■□□□ 1.93
CLN6-222ENST00000637667 SCN11AQ9UI33 1791 aa27.08■■□□□ 1.93
CLN6-222ENST00000637667 CRKLP46109 303 aaKnown RBP27.08■■□□□ 1.93
CLN6-222ENST00000637667 NLGN1Q8N2Q7 840 aa27.08■■□□□ 1.93
CLN6-222ENST00000637667 U2SURPO15042 1029 aaKnown RBP27.07■■□□□ 1.92
CLN6-222ENST00000637667 RFC4P35249 363 aa27.07■■□□□ 1.92
CLN6-222ENST00000637667 MRC1P22897 1456 aa27.06■■□□□ 1.92
CLN6-222ENST00000637667 GYS1P13807 737 aa27.05■■□□□ 1.92
CLN6-222ENST00000637667 MYH14Q7Z406 1995 aaKnown RBP27.05■■□□□ 1.92
CLN6-222ENST00000637667 SLC39A6Q13433 755 aa27.03■■□□□ 1.92
CLN6-222ENST00000637667 DNAJC10Q8IXB1 793 aa27.02■■□□□ 1.92
CLN6-222ENST00000637667 INTS5Q6P9B9 1019 aaKnown RBP27.01■■□□□ 1.91
CLN6-222ENST00000637667 WWC3Q9ULE0 1092 aa27.01■■□□□ 1.91
CLN6-222ENST00000637667 GAS2L2Q8NHY3 880 aa27■■□□□ 1.91
CLN6-222ENST00000637667 CFAP53Q96M91 514 aa27■■□□□ 1.91
CLN6-222ENST00000637667 CICQ96RK0 1608 aaPredicted RBP27■■□□□ 1.91
CLN6-222ENST00000637667 TJP1Q07157 1748 aa26.99■■□□□ 1.91
CLN6-222ENST00000637667 SRP68Q9UHB9 627 aaKnown RBP26.99■■□□□ 1.91
CLN6-222ENST00000637667 ADAMTS7Q9UKP4 1686 aa26.98■■□□□ 1.91
CLN6-222ENST00000637667 USP42Q9H9J4 1324 aaKnown RBP26.98■■□□□ 1.91
CLN6-222ENST00000637667 CCDC87Q9NVE4 849 aa26.98■■□□□ 1.91
CLN6-222ENST00000637667 PARP3Q9Y6F1 533 aa26.97■■□□□ 1.91
CLN6-222ENST00000637667 C10orf71Q711Q0 1435 aa26.97■■□□□ 1.91
CLN6-222ENST00000637667 KCPQ6ZWJ8 1503 aa26.96■■□□□ 1.91
CLN6-222ENST00000637667 GNAT3A8MTJ3 354 aa26.96■■□□□ 1.91
CLN6-222ENST00000637667 CYP19A1P11511 503 aaPredicted RBP26.96■■□□□ 1.91
CLN6-222ENST00000637667 PXDNLA1KZ92 1463 aa26.95■■□□□ 1.91
CLN6-222ENST00000637667 PPP2R1AP30153 589 aa26.95■■□□□ 1.9
CLN6-222ENST00000637667 TGFB2P61812 414 aa26.95■■□□□ 1.9
CLN6-222ENST00000637667 SOS1Q07889 1333 aaPredicted RBP26.94■■□□□ 1.9
CLN6-222ENST00000637667 C4AP0C0L4 1744 aa26.94■■□□□ 1.9
CLN6-222ENST00000637667 FKBP8Q14318 412 aa26.94■■□□□ 1.9
CLN6-222ENST00000637667 VSIG10Q8N0Z9 540 aa26.94■■□□□ 1.9
CLN6-222ENST00000637667 IL17REQ8NFR9 667 aa26.94■■□□□ 1.9
CLN6-222ENST00000637667 NUDCQ9Y266 331 aa26.94■■□□□ 1.9
CLN6-222ENST00000637667 PRKAR2BP31323 418 aa26.93■■□□□ 1.9
CLN6-222ENST00000637667 RSPH6AQ9H0K4 717 aa26.93■■□□□ 1.9
CLN6-222ENST00000637667 TEFQ10587 303 aa26.92■■□□□ 1.9
CLN6-222ENST00000637667 TTC5Q8N0Z6 440 aa26.92■■□□□ 1.9
CLN6-222ENST00000637667 PHACTR3Q96KR7 559 aa26.92■■□□□ 1.9
CLN6-222ENST00000637667 SENP3-EIF4A1A0A087X0R7 540 aa26.91■■□□□ 1.9
CLN6-222ENST00000637667 A0A0G2JLW4 131 aa26.91■■□□□ 1.9
CLN6-222ENST00000637667 ZPR1O75312 459 aa26.91■■□□□ 1.9
CLN6-222ENST00000637667 KIF13BQ9NQT8 1826 aa26.9■■□□□ 1.9
CLN6-222ENST00000637667 DDR1Q08345 913 aa26.9■■□□□ 1.9
CLN6-222ENST00000637667 ZBTB1Q9Y2K1 713 aa26.9■■□□□ 1.9
CLN6-222ENST00000637667 VIRMAQ69YN4 1812 aaKnown RBP26.9■■□□□ 1.9
CLN6-222ENST00000637667 GIGYF1O75420 1035 aaPredicted RBP26.89■■□□□ 1.9
CLN6-222ENST00000637667 U2AF1L5P0DN76 240 aaPredicted RBP26.89■■□□□ 1.9
CLN6-222ENST00000637667 DPEP1P16444 411 aa26.89■■□□□ 1.9
CLN6-222ENST00000637667 C1QTNF8P60827 252 aa26.89■■□□□ 1.9
CLN6-222ENST00000637667 U2AF1Q01081 240 aaKnown RBP eCLIP26.89■■□□□ 1.9
CLN6-222ENST00000637667 ATP10DQ9P241 1426 aa26.89■■□□□ 1.89
CLN6-222ENST00000637667 USPL1Q5W0Q7 1092 aa26.88■■□□□ 1.89
CLN6-222ENST00000637667 COL15A1P39059 1388 aa26.87■■□□□ 1.89
CLN6-222ENST00000637667 STARD3NLO95772 234 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms