RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 BTBD6Q96KE9 485 aa4.21□□□□□ -1.74
SCN1A-215ENST00000637285 HMX1Q9NP08 348 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-215ENST00000637285 PCDHB9Q9Y5E1 797 aa4.21□□□□□ -1.74
SCN1A-215ENST00000637285 C2CD2LO14523 706 aa4.2□□□□□ -1.74
SCN1A-215ENST00000637285 ABHD17AQ96GS6 310 aa4.2□□□□□ -1.74
SCN1A-215ENST00000637285 ESF1Q9H501 851 aaKnown RBP4.2□□□□□ -1.74
SCN1A-215ENST00000637285 RUBCNLQ9H714 662 aa4.2□□□□□ -1.74
SCN1A-215ENST00000637285 ARHGEF10LQ9HCE6 1279 aa4.2□□□□□ -1.74
SCN1A-215ENST00000637285 NOP53Q9NZM5 478 aaKnown RBP4.2□□□□□ -1.74
SCN1A-215ENST00000637285 CSB-PGBD3P0DP91 1061 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 GATA4P43694 442 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 ERVK-9P63128 1117 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 CTBSQ01459 385 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 SLCO4C1Q6ZQN7 724 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 CYP2U1Q7Z449 544 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 PGBD3Q8N328 593 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 PROCA1Q8NCQ7 364 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-215ENST00000637285 RAB6BQ9NRW1 208 aa4.19□□□□□ -1.74
SCN1A-215ENST00000637285 NEURL1BA8MQ27 555 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 EPXP11678 715 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 FGFR3P22607 806 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 SCTRP47872 440 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 DGKGP49619 791 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 FOXD4L6Q3SYB3 417 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-215ENST00000637285 EFHC2Q5JST6 749 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 FOXD4L3Q6VB84 417 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-215ENST00000637285 KRTAP4-12Q9BQ66 201 aa4.18□□□□□ -1.74
SCN1A-215ENST00000637285 ATXN7L1Q9ULK2 861 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-215ENST00000637285 A0A1B0GTH6 734 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 USP17L8P0C7I0 530 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 GTF2E1P29083 439 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-215ENST00000637285 CENPCQ03188 943 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 UBAP2LQ14157 1087 aaKnown RBP4.17□□□□□ -1.74
SCN1A-215ENST00000637285 SKIV2LQ15477 1246 aaKnown RBP4.17□□□□□ -1.74
SCN1A-215ENST00000637285 GNASQ5JWF2 1037 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 NBPF11Q86T75 865 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 RNF135Q8IUD6 432 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 CNKSR1Q969H4 720 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 ZSCAN10Q96SZ4 725 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-215ENST00000637285 OSBPL3Q9H4L5 887 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 ZFP64Q9NPA5 681 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 PCDHB11Q9Y5F2 797 aa4.17□□□□□ -1.74
SCN1A-215ENST00000637285 ZBBXA8MT70 800 aa4.16□□□□□ -1.74
SCN1A-215ENST00000637285 BNIP3LO60238 219 aa4.16□□□□□ -1.74
SCN1A-215ENST00000637285 MSX1P28360 303 aa4.16□□□□□ -1.74
SCN1A-215ENST00000637285 RSPO4Q2I0M5 234 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-215ENST00000637285 RNF20Q5VTR2 975 aa4.16□□□□□ -1.74
SCN1A-215ENST00000637285 TMEM214Q6NUQ4 689 aaKnown RBP4.16□□□□□ -1.74
SCN1A-215ENST00000637285 CHSY3Q70JA7 882 aa4.16□□□□□ -1.74
SCN1A-215ENST00000637285 BTBD11A6QL63 1104 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 IL2RAP01589 272 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 ARAFP10398 606 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 LBRQ14739 615 aaKnown RBP4.15□□□□□ -1.75
SCN1A-215ENST00000637285 C4orf17Q53FE4 359 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 ARTNQ5T4W7 220 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 CCDC125Q86Z20 511 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 ESYT1Q9BSJ8 1104 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.15□□□□□ -1.75
SCN1A-215ENST00000637285 PLVAPQ9BX97 442 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 SLC24A3Q9HC58 644 aa4.15□□□□□ -1.75
SCN1A-215ENST00000637285 TRAK2O60296 914 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 FBXO45P0C2W1 286 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 SPATA31C1P0DKV0 1188 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 SH3D19Q5HYK7 790 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 TRIM11Q96F44 468 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 TPSG1Q9NRR2 321 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 NDFIP2Q9NV92 336 aa4.14□□□□□ -1.75
SCN1A-215ENST00000637285 GNRH1P01148 92 aa4.13□□□□□ -1.75
SCN1A-215ENST00000637285 NKAPLQ5M9Q1 402 aa4.13□□□□□ -1.75
SCN1A-215ENST00000637285 TRIM34Q9BYJ4 488 aa4.13□□□□□ -1.75
SCN1A-215ENST00000637285 KRTAP9-9Q9BYP9 154 aa4.13□□□□□ -1.75
SCN1A-215ENST00000637285 KRTAP9-4Q9BYQ2 154 aa4.13□□□□□ -1.75
SCN1A-215ENST00000637285 DYRK3O43781 588 aa4.12□□□□□ -1.75
SCN1A-215ENST00000637285 APBA3O96018 575 aa4.12□□□□□ -1.75
SCN1A-215ENST00000637285 ADH6P28332 368 aa4.12□□□□□ -1.75
SCN1A-215ENST00000637285 XAGE2Q96GT9 111 aa4.12□□□□□ -1.75
SCN1A-215ENST00000637285 ZCCHC2Q9C0B9 1178 aaKnown RBP4.12□□□□□ -1.75
SCN1A-215ENST00000637285 FHDC1Q9C0D6 1143 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-215ENST00000637285 PCDHGC4Q9Y5F7 938 aa4.12□□□□□ -1.75
SCN1A-215ENST00000637285 DCDC2BA2VCK2 349 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 ATXN7O15265 892 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-215ENST00000637285 MYCP01106 439 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-215ENST00000637285 CD33P20138 364 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 PCBP4P57723 403 aaKnown RBP4.11□□□□□ -1.75
SCN1A-215ENST00000637285 PRRT3Q5FWE3 981 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 PRSS36Q5K4E3 855 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 FIGNL1Q6PIW4 674 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 FCHSD1Q86WN1 690 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 KLF15Q9UIH9 416 aa4.11□□□□□ -1.75
SCN1A-215ENST00000637285 FAM229AH3BQW9 127 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 RFC5P40937 340 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 PLA2G4AP47712 749 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 TBC1D9Q6ZT07 1266 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 RHBDD1Q8TEB9 315 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 AIDAQ96BJ3 306 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 CRISPLD1Q9H336 500 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 PRR12Q9ULL5 1215 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 HRH3Q9Y5N1 445 aa4.1□□□□□ -1.75
SCN1A-215ENST00000637285 SPDYE3A6NKU9 549 aa4.09□□□□□ -1.75
SCN1A-215ENST00000637285 KHNYNO15037 678 aaKnown RBP4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms