RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 RALBP1Q15311 655 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 CDC37L1Q7L3B6 337 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 RTEL1Q9NZ71 1219 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 MYO5BQ9ULV0 1848 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 OVOS2A0A0J9YW53 1432 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 OVOS2Q6IE36 1432 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 H0YIN7 160 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 SREBF2Q12772 1141 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 SYCP1Q15431 976 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 TAF12Q16514 161 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 GPHNQ9NQX3 736 aaPredicted RBP4.05□□□□□ -1.76
LPP-220ENST00000617246 PIK3C2BO00750 1634 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 CCDC112Q8NEF3 446 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 COL14A1Q05707 1796 aaKnown RBP4.05□□□□□ -1.76
LPP-220ENST00000617246 WASHC4Q2M389 1173 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 EP400NLQ6ZTU2 488 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 CAPN15O75808 1086 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 NBR1Q14596 966 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 FCHSD2O94868 740 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 NOM1Q5C9Z4 860 aaKnown RBP4.05□□□□□ -1.76
LPP-220ENST00000617246 CT47A1Q5JQC4 288 aaPredicted RBP4.05□□□□□ -1.76
LPP-220ENST00000617246 CDC5LQ99459 802 aaKnown RBP4.05□□□□□ -1.76
LPP-220ENST00000617246 EPS15P42566 896 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 CNNM1Q9NRU3 951 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 MBIPQ9NS73 344 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 LTN1O94822 1766 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 NIM1KQ8IY84 436 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 CSADQ9Y600 493 aa4.05□□□□□ -1.76
LPP-220ENST00000617246 SUPT16HQ9Y5B9 1047 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 ROBO1Q9Y6N7 1651 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 AKAP11Q9UKA4 1901 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 BLMP54132 1417 aaPredicted RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 CCDC97Q96F63 343 aaPredicted RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 SPATA32Q96LK8 384 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 LBHD1Q9BQE6 289 aaPredicted RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 KIF16BQ96L93 1317 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ALDH1B1P30837 517 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ANKIB1Q9P2G1 1089 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 DHX29Q7Z478 1369 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 KRT28Q7Z3Y7 464 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ZNF526Q8TF50 670 aaPredicted RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 GJA3Q9Y6H8 435 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 QTRT2Q9H974 415 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 TMOD4Q9NZQ9 345 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ORC3Q9UBD5 711 aaPredicted RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 BCS1LQ9Y276 419 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 OVOS2A0A0G2JMS6 1433 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 TRAK1Q9UPV9 953 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ANP32AP39687 249 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 SKIV2LQ15477 1246 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 GRIPAP1Q4V328 841 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ARMC9Q7Z3E5 817 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 LEO1Q8WVC0 666 aaPredicted RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 CUL5Q93034 780 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 HAUS2Q9NVX0 235 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 VIMP08670 466 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 KRT27Q7Z3Y8 459 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 HACE1Q8IYU2 909 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 RBM17Q96I25 401 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 TLR3O15455 904 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 NCBP1Q09161 790 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 SPOUT1Q5T280 376 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 DZIP1Q86YF9 867 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 PNMA3Q9UL41 463 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 TTC21AQ8NDW8 1320 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 ATP5J2-PTCD1G3V325 749 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 SLC4A3P48751 1232 aa4.04□□□□□ -1.76
LPP-220ENST00000617246 LRRFIP2Q9Y608 721 aaKnown RBP4.04□□□□□ -1.76
LPP-220ENST00000617246 PTPRMP28827 1452 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 BECN1Q14457 450 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 DCDC2CA8MYV0 355 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 CCDC155Q8N6L0 562 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 CCDC150Q8NCX0 1101 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 SAMD9LQ8IVG5 1584 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 N4BP2Q86UW6 1770 aaPredicted RBP4.03□□□□□ -1.76
LPP-220ENST00000617246 STK25O00506 426 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 PHF8Q9UPP1 1060 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 NOL8Q76FK4 1167 aaKnown RBP4.03□□□□□ -1.76
LPP-220ENST00000617246 ARHGAP27Q6ZUM4 889 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 HMGB3O15347 200 aaKnown RBP4.03□□□□□ -1.76
LPP-220ENST00000617246 KMT5BQ4FZB7 885 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 STK24Q9Y6E0 443 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 NCOA1Q15788 1441 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 YTHDC2Q9H6S0 1430 aaKnown RBP4.03□□□□□ -1.76
LPP-220ENST00000617246 ZEB2O60315 1214 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 HTATIP2Q9BUP3 242 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 LRRCC1Q9C099 1032 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 DDX60LQ5H9U9 1706 aaKnown RBP4.03□□□□□ -1.76
LPP-220ENST00000617246 ZNF804AQ7Z570 1209 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 CCDC88AQ3V6T2 1871 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 CCDC158Q5M9N0 1113 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 GTF3C3Q9Y5Q9 886 aa4.03□□□□□ -1.76
LPP-220ENST00000617246 MATR3P43243 847 aaKnown RBP eCLIP4.03□□□□□ -1.771e-6■■■□□ 18.8
LPP-220ENST00000617246 RUFY2Q8WXA3 655 aa4.03□□□□□ -1.77
LPP-220ENST00000617246 USP6P35125 1406 aa4.02□□□□□ -1.77
LPP-220ENST00000617246 GSTO1P78417 241 aa4.02□□□□□ -1.77
LPP-220ENST00000617246 ODR4Q5SWX8 454 aa4.02□□□□□ -1.77
LPP-220ENST00000617246 C19orf44Q9H6X5 657 aa4.02□□□□□ -1.77
LPP-220ENST00000617246 NWD1Q149M9 1564 aa4.02□□□□□ -1.77
LPP-220ENST00000617246 DLC1Q96QB1 1528 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms