RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.38□□□□□ -0.91
SMAD4-216ENST00000593223 ESYT1Q9BSJ8 1104 aa9.38□□□□□ -0.91
SMAD4-216ENST00000593223 FIGNL2A6NMB9 653 aa9.37□□□□□ -0.91
SMAD4-216ENST00000593223 C11orf95C9JLR9 678 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-216ENST00000593223 BACH1O14867 736 aa9.37□□□□□ -0.91
SMAD4-216ENST00000593223 MAN1A2O60476 641 aa9.37□□□□□ -0.91
SMAD4-216ENST00000593223 PPP1R15AO75807 674 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-216ENST00000593223 GTF2E1P29083 439 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-216ENST00000593223 PTK7Q13308 1070 aa9.37□□□□□ -0.91
SMAD4-216ENST00000593223 XAGE2Q96GT9 111 aa9.37□□□□□ -0.91
SMAD4-216ENST00000593223 TMEM229AB2RXF0 380 aa9.36□□□□□ -0.91
SMAD4-216ENST00000593223 DPYDQ12882 1025 aa9.36□□□□□ -0.91
SMAD4-216ENST00000593223 TLR1Q15399 786 aa9.36□□□□□ -0.91
SMAD4-216ENST00000593223 ANKMY2Q8IV38 441 aa9.36□□□□□ -0.91
SMAD4-216ENST00000593223 SIX5Q8N196 739 aa9.36□□□□□ -0.91
SMAD4-216ENST00000593223 ZNF358Q9NW07 568 aa9.36□□□□□ -0.91
SMAD4-216ENST00000593223 NOVA2Q9UNW9 492 aaKnown RBP9.36□□□□□ -0.91
SMAD4-216ENST00000593223 SOS2Q07890 1332 aaPredicted RBP9.35□□□□□ -0.91
SMAD4-216ENST00000593223 SFI1A8K8P3 1242 aa9.35□□□□□ -0.91
SMAD4-216ENST00000593223 SEC13P55735 322 aa9.35□□□□□ -0.91
SMAD4-216ENST00000593223 SRPK2P78362 688 aaKnown RBP9.35□□□□□ -0.91
SMAD4-216ENST00000593223 CENPCQ03188 943 aa9.35□□□□□ -0.91
SMAD4-216ENST00000593223 FAM200AQ8TCP9 573 aa9.35□□□□□ -0.91
SMAD4-216ENST00000593223 TRIM47Q96LD4 638 aa9.35□□□□□ -0.91
SMAD4-216ENST00000593223 WASLO00401 505 aaPredicted RBP9.34□□□□□ -0.91
SMAD4-216ENST00000593223 RNF144AP50876 292 aaPredicted RBP9.34□□□□□ -0.91
SMAD4-216ENST00000593223 FOXD4L5Q5VV16 416 aaPredicted RBP9.34□□□□□ -0.91
SMAD4-216ENST00000593223 ATG7O95352 703 aa9.33□□□□□ -0.92
SMAD4-216ENST00000593223 GPC1P35052 558 aa9.33□□□□□ -0.92
SMAD4-216ENST00000593223 TMEM214Q6NUQ4 689 aaKnown RBP9.33□□□□□ -0.92
SMAD4-216ENST00000593223 LYSMD3Q7Z3D4 306 aa9.33□□□□□ -0.92
SMAD4-216ENST00000593223 PRICKLE2Q7Z3G6 844 aa9.33□□□□□ -0.92
SMAD4-216ENST00000593223 RNF217Q8TC41 542 aa9.33□□□□□ -0.92
SMAD4-216ENST00000593223 ZSCAN10Q96SZ4 725 aaPredicted RBP9.33□□□□□ -0.92
SMAD4-216ENST00000593223 SOBPA7XYQ1 873 aa9.32□□□□□ -0.92
SMAD4-216ENST00000593223 SNRPBP14678 240 aaKnown RBP9.32□□□□□ -0.92
SMAD4-216ENST00000593223 SMTNP53814 917 aa9.32□□□□□ -0.92
SMAD4-216ENST00000593223 HINFPQ9BQA5 517 aa9.32□□□□□ -0.92
SMAD4-216ENST00000593223 DNMT3LQ9UJW3 386 aa9.32□□□□□ -0.92
SMAD4-216ENST00000593223 A6NJY4 79 aa9.31□□□□□ -0.92
SMAD4-216ENST00000593223 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.31□□□□□ -0.92
SMAD4-216ENST00000593223 TNS4Q8IZW8 715 aa9.31□□□□□ -0.92
SMAD4-216ENST00000593223 TSEN2Q8NCE0 465 aaKnown RBP9.31□□□□□ -0.92
SMAD4-216ENST00000593223 CSB-PGBD3P0DP91 1061 aa9.3□□□□□ -0.92
SMAD4-216ENST00000593223 ELOAQ14241 798 aaKnown RBP9.3□□□□□ -0.92
SMAD4-216ENST00000593223 GNASQ5JWF2 1037 aa9.3□□□□□ -0.92
SMAD4-216ENST00000593223 SLC4A9Q96Q91 983 aa9.3□□□□□ -0.92
SMAD4-216ENST00000593223 GRIP2Q9C0E4 1043 aa9.3□□□□□ -0.92
SMAD4-216ENST00000593223 HRH3Q9Y5N1 445 aa9.3□□□□□ -0.92
SMAD4-216ENST00000593223 M0R2N6 131 aa9.29□□□□□ -0.92
SMAD4-216ENST00000593223 DKK1O94907 266 aa9.29□□□□□ -0.92
SMAD4-216ENST00000593223 RHOQP17081 205 aa9.29□□□□□ -0.92
SMAD4-216ENST00000593223 ARXQ96QS3 562 aa9.29□□□□□ -0.92
SMAD4-216ENST00000593223 FHDC1Q9C0D6 1143 aaPredicted RBP9.29□□□□□ -0.92
SMAD4-216ENST00000593223 ZMIZ1Q9ULJ6 1067 aa9.29□□□□□ -0.92
SMAD4-216ENST00000593223 POU4F2Q12837 409 aa9.28□□□□□ -0.92
SMAD4-216ENST00000593223 LCE2AQ5TA79 106 aaPredicted RBP9.28□□□□□ -0.92
SMAD4-216ENST00000593223 NBPF15Q8N660 670 aa9.28□□□□□ -0.92
SMAD4-216ENST00000593223 STK32AQ8WU08 396 aa9.28□□□□□ -0.92
SMAD4-216ENST00000593223 LGR5O75473 907 aa9.27□□□□□ -0.93
SMAD4-216ENST00000593223 MTFR1Q15390 333 aa9.27□□□□□ -0.93
SMAD4-216ENST00000593223 TAS1R3Q7RTX0 852 aa9.27□□□□□ -0.93
SMAD4-216ENST00000593223 RHBDD1Q8TEB9 315 aa9.27□□□□□ -0.93
SMAD4-216ENST00000593223 SCHIP1Q9P0W5 487 aaPredicted RBP9.27□□□□□ -0.93
SMAD4-216ENST00000593223 CDK2AP1O14519 115 aa9.26□□□□□ -0.93
SMAD4-216ENST00000593223 PHKA2P46019 1235 aa9.26□□□□□ -0.93
SMAD4-216ENST00000593223 TBCELQ5QJ74 424 aa9.26□□□□□ -0.93
SMAD4-216ENST00000593223 TMEM164Q5U3C3 297 aa9.26□□□□□ -0.93
SMAD4-216ENST00000593223 PPARGC1BQ86YN6 1023 aaKnown RBP9.26□□□□□ -0.93
SMAD4-216ENST00000593223 SLC9A9Q8IVB4 645 aa9.26□□□□□ -0.93
SMAD4-216ENST00000593223 CABP1Q9NZU7 370 aa9.26□□□□□ -0.93
SMAD4-216ENST00000593223 SPATA31C2B4DYI2 1134 aa9.25□□□□□ -0.93
SMAD4-216ENST00000593223 NBPF10Q6P3W6 841 aaKnown RBP9.25□□□□□ -0.93
SMAD4-216ENST00000593223 NIFKQ9BYG3 293 aaKnown RBP9.25□□□□□ -0.93
SMAD4-216ENST00000593223 CHMP3Q9Y3E7 222 aa9.25□□□□□ -0.93
SMAD4-216ENST00000593223 EPHA4P54764 986 aa9.24□□□□□ -0.93
SMAD4-216ENST00000593223 C4orf17Q53FE4 359 aa9.24□□□□□ -0.93
SMAD4-216ENST00000593223 SCG3Q8WXD2 468 aaKnown RBP9.24□□□□□ -0.93
SMAD4-216ENST00000593223 TSPAN10Q9H1Z9 355 aaPredicted RBP9.24□□□□□ -0.93
SMAD4-216ENST00000593223 TIMMDC1Q9NPL8 285 aa9.24□□□□□ -0.93
SMAD4-216ENST00000593223 USP3Q9Y6I4 520 aa9.24□□□□□ -0.93
SMAD4-216ENST00000593223 PPP1R12BO60237 982 aaPredicted RBP9.23□□□□□ -0.93
SMAD4-216ENST00000593223 PLA2G4AP47712 749 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 FOXK2Q01167 660 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 PTSQ03393 145 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 SWI5Q1ZZU3 235 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 TREML4Q6UXN2 200 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 CHMP7Q8WUX9 453 aaPredicted RBP9.23□□□□□ -0.93
SMAD4-216ENST00000593223 AIDAQ96BJ3 306 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 ZNF232Q9UNY5 417 aa9.23□□□□□ -0.93
SMAD4-216ENST00000593223 IQSEC3Q9UPP2 1182 aaPredicted RBP9.23□□□□□ -0.93
SMAD4-216ENST00000593223 WDR44Q5JSH3 913 aa9.22□□□□□ -0.93
SMAD4-216ENST00000593223 ATAD2Q6PL18 1390 aa9.22□□□□□ -0.93
SMAD4-216ENST00000593223 PRMT3O60678 531 aa9.21□□□□□ -0.94
SMAD4-216ENST00000593223 PSMA6P60900 246 aaKnown RBP9.21□□□□□ -0.94
SMAD4-216ENST00000593223 PRIMPOLQ96LW4 560 aa9.21□□□□□ -0.94
SMAD4-216ENST00000593223 GAS2L1Q99501 681 aaPredicted RBP9.21□□□□□ -0.94
SMAD4-216ENST00000593223 PARP3Q9Y6F1 533 aa9.21□□□□□ -0.94
SMAD4-216ENST00000593223 SERTM1A2A2V5 107 aa9.2□□□□□ -0.94
SMAD4-216ENST00000593223 RETREG2Q8NC44 543 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms