RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	COL14A1	Q05707	1796 aa	Known RBP	19.56	■□□□□ 0.72
DDX39A-209	ENST00000589318	KDM6A	O15550	1401 aa	Predicted RBP	19.56	■□□□□ 0.72
DDX39A-209	ENST00000589318	ABCC4	O15439	1325 aa		19.55	■□□□□ 0.72
DDX39A-209	ENST00000589318	SPG7	Q9UQ90	795 aa		19.55	■□□□□ 0.72
DDX39A-209	ENST00000589318	RGS12	O14924	1447 aa		19.54	■□□□□ 0.72
DDX39A-209	ENST00000589318	CACNA1F	O60840	1977 aa		19.54	■□□□□ 0.72
DDX39A-209	ENST00000589318	PHKG2	P15735	406 aa		19.54	■□□□□ 0.72
DDX39A-209	ENST00000589318	TOM1L2	Q6ZVM7	507 aa		19.54	■□□□□ 0.72
DDX39A-209	ENST00000589318	CENPQ	Q7L2Z9	268 aa	Predicted RBP	19.54	■□□□□ 0.72
DDX39A-209	ENST00000589318	SHANK3	Q9BYB0	1731 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	TEF	Q10587	303 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	CARD10	Q9BWT7	1032 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	PCDHB15	Q9Y5E8	787 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	SOS1	Q07889	1333 aa	Predicted RBP	19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	CYP27B1	O15528	508 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	LARP1	Q6PKG0	1096 aa	Known RBP	19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	ITPRIP	Q8IWB1	547 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	DDX19B	Q9UMR2	479 aa		19.53	■□□□□ 0.72
DDX39A-209	ENST00000589318	IGHD	P01880	384 aa		19.52	■□□□□ 0.72
DDX39A-209	ENST00000589318	EIF4A1	P60842	406 aa	Known RBP	19.52	■□□□□ 0.72
DDX39A-209	ENST00000589318	KCNQ3	O43525	872 aa		19.51	■□□□□ 0.71
DDX39A-209	ENST00000589318	TOM1	O60784	492 aa		19.51	■□□□□ 0.71
DDX39A-209	ENST00000589318	MRC1	P22897	1456 aa		19.51	■□□□□ 0.71
DDX39A-209	ENST00000589318	IFNL2	Q8IZJ0	200 aa		19.51	■□□□□ 0.71
DDX39A-209	ENST00000589318	STRN4	Q9NRL3	753 aa		19.51	■□□□□ 0.71
DDX39A-209	ENST00000589318	BTBD11	A6QL63	1104 aa		19.5	■□□□□ 0.71
DDX39A-209	ENST00000589318	API5	Q9BZZ5	524 aa	Known RBP	19.5	■□□□□ 0.71
DDX39A-209	ENST00000589318	SLC4A2	P04920	1241 aa		19.49	■□□□□ 0.71
DDX39A-209	ENST00000589318	ZBTB40	Q9NUA8	1239 aa		19.49	■□□□□ 0.71
DDX39A-209	ENST00000589318	BTG4	Q9NY30	223 aa		19.49	■□□□□ 0.71
DDX39A-209	ENST00000589318	HEG1	Q9ULI3	1381 aa		19.48	■□□□□ 0.71
DDX39A-209	ENST00000589318	PLCH1	Q4KWH8	1693 aa		19.48	■□□□□ 0.71
DDX39A-209	ENST00000589318	PIP4K2B	P78356	416 aa		19.48	■□□□□ 0.71
DDX39A-209	ENST00000589318	PTPRC	P08575	1304 aa		19.48	■□□□□ 0.71
DDX39A-209	ENST00000589318	EVA1C	P58658	441 aa		19.47	■□□□□ 0.71
DDX39A-209	ENST00000589318	G2E3	Q7L622	706 aa		19.47	■□□□□ 0.71
DDX39A-209	ENST00000589318	CCDC30	Q5VVM6	783 aa		19.47	■□□□□ 0.71
DDX39A-209	ENST00000589318	SKAP1	Q86WV1	359 aa		19.47	■□□□□ 0.71
DDX39A-209	ENST00000589318	SLC52A2	Q9HAB3	445 aa		19.47	■□□□□ 0.71
DDX39A-209	ENST00000589318	ZBTB7B	O15156	539 aa	Predicted RBP	19.46	■□□□□ 0.71
DDX39A-209	ENST00000589318	HOXB7	P09629	217 aa		19.46	■□□□□ 0.71
DDX39A-209	ENST00000589318	IL2RB	P14784	551 aa		19.46	■□□□□ 0.71
DDX39A-209	ENST00000589318	DCAF5	Q96JK2	942 aa		19.46	■□□□□ 0.71
DDX39A-209	ENST00000589318	NRAP	Q86VF7	1730 aa		19.45	■□□□□ 0.7
DDX39A-209	ENST00000589318	ZCRB1	Q8TBF4	217 aa	Known RBP	19.45	■□□□□ 0.7
DDX39A-209	ENST00000589318	INTS3	Q68E01	1043 aa	Known RBP	19.44	■□□□□ 0.7
DDX39A-209	ENST00000589318	NECTIN2	Q92692	538 aa		19.44	■□□□□ 0.7
DDX39A-209	ENST00000589318	DDRGK1	Q96HY6	314 aa		19.44	■□□□□ 0.7
DDX39A-209	ENST00000589318	STK31	Q9BXU1	1019 aa		19.44	■□□□□ 0.7
DDX39A-209	ENST00000589318	PCDH11X	Q9BZA7	1347 aa		19.44	■□□□□ 0.7
DDX39A-209	ENST00000589318	PCDH11Y	Q9BZA8	1340 aa		19.44	■□□□□ 0.7
DDX39A-209	ENST00000589318	UBAP1L	F5GYI3	381 aa		19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	HSP90AB1	P08238	724 aa	Known RBP	19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	HDGFL1	Q5TGJ6	251 aa		19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	WNK3	Q9BYP7	1800 aa		19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	NFATC2IP	Q8NCF5	419 aa		19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	DISP2	A7MBM2	1401 aa		19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	N4BP2	Q86UW6	1770 aa	Predicted RBP	19.43	■□□□□ 0.7
DDX39A-209	ENST00000589318	C5	P01031	1676 aa		19.42	■□□□□ 0.7
DDX39A-209	ENST00000589318	GIGYF1	O75420	1035 aa	Predicted RBP	19.41	■□□□□ 0.7
DDX39A-209	ENST00000589318	FLII	Q13045	1269 aa		19.41	■□□□□ 0.7
DDX39A-209	ENST00000589318	NKX1-1	Q15270	411 aa	Predicted RBP	19.41	■□□□□ 0.7
DDX39A-209	ENST00000589318	ZNF790	Q6PG37	636 aa		19.41	■□□□□ 0.7
DDX39A-209	ENST00000589318	GLI3	P10071	1580 aa		19.4	■□□□□ 0.7
DDX39A-209	ENST00000589318	TOGARAM1	Q9Y4F4	1720 aa		19.4	■□□□□ 0.7
DDX39A-209	ENST00000589318	RTN4	Q9NQC3	1192 aa	Known RBP	19.4	■□□□□ 0.7
DDX39A-209	ENST00000589318	SLC39A6	Q13433	755 aa		19.39	■□□□□ 0.7
DDX39A-209	ENST00000589318	HDAC1	Q13547	482 aa	Predicted RBP	19.39	■□□□□ 0.7
DDX39A-209	ENST00000589318	ADAMTS2	O95450	1211 aa		19.39	■□□□□ 0.69
DDX39A-209	ENST00000589318	GSE1	Q14687	1217 aa		19.39	■□□□□ 0.69
DDX39A-209	ENST00000589318	RWDD1	Q9H446	243 aa	Predicted RBP	19.39	■□□□□ 0.69
DDX39A-209	ENST00000589318	NWD2	Q9ULI1	1742 aa		19.38	■□□□□ 0.69
DDX39A-209	ENST00000589318	PRAMEF22	A3QJZ6	481 aa		19.38	■□□□□ 0.69
DDX39A-209	ENST00000589318		F6X3S4	739 aa		19.38	■□□□□ 0.69
DDX39A-209	ENST00000589318	EIF2S2	P20042	333 aa	Known RBP	19.38	■□□□□ 0.69
DDX39A-209	ENST00000589318	CHMP4B	Q9H444	224 aa	Known RBP	19.38	■□□□□ 0.69
DDX39A-209	ENST00000589318	PAPPA	Q13219	1627 aa		19.38	■□□□□ 0.69
DDX39A-209	ENST00000589318	CHPF2	Q9P2E5	772 aa		19.37	■□□□□ 0.69
DDX39A-209	ENST00000589318	UBR2	Q8IWV8	1755 aa		19.37	■□□□□ 0.69
DDX39A-209	ENST00000589318	PHAX	Q9H814	394 aa	Known RBP	19.37	■□□□□ 0.69
DDX39A-209	ENST00000589318	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	19.37	■□□□□ 0.69
DDX39A-209	ENST00000589318	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.36	■□□□□ 0.69
DDX39A-209	ENST00000589318	SLIT2	O94813	1529 aa		19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	CABP4	P57796	275 aa		19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	FKBP5	Q13451	457 aa	Predicted RBP	19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	CHMP4A	Q9BY43	222 aa		19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	C1orf115	Q9H7X2	142 aa		19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	PXDNL	A1KZ92	1463 aa		19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	DDX54	Q8TDD1	881 aa	Known RBP	19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	ZNF496	Q96IT1	587 aa	Predicted RBP	19.35	■□□□□ 0.69
DDX39A-209	ENST00000589318	NUTM2B	A6NNL0	878 aa	Predicted RBP	19.34	■□□□□ 0.69
DDX39A-209	ENST00000589318	NUTM2E	B1AL46	878 aa	Predicted RBP	19.34	■□□□□ 0.69
DDX39A-209	ENST00000589318	ERVV-2	B6SEH9	535 aa		19.34	■□□□□ 0.69
DDX39A-209	ENST00000589318	NUTM2A	Q8IVF1	878 aa	Predicted RBP	19.34	■□□□□ 0.69
DDX39A-209	ENST00000589318	SIRT2	Q8IXJ6	389 aa		19.33	■□□□□ 0.69
DDX39A-209	ENST00000589318	CERK	Q8TCT0	537 aa		19.33	■□□□□ 0.69
DDX39A-209	ENST00000589318	BACH2	Q9BYV9	841 aa		19.33	■□□□□ 0.69
DDX39A-209	ENST00000589318	ANXA1	P04083	346 aa		19.33	■□□□□ 0.68
DDX39A-209	ENST00000589318	CCT4	P50991	539 aa	Known RBP	19.33	■□□□□ 0.68
DDX39A-209	ENST00000589318	DBF4	Q9UBU7	674 aa	Predicted RBP	19.33	■□□□□ 0.68

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms