RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 PARP4Q9UKK3 1724 aaKnown RBP12.68□□□□□ -0.38
VPS25-202ENST00000589219 VIRMAQ69YN4 1812 aaKnown RBP12.67□□□□□ -0.38
VPS25-202ENST00000589219 DLG5Q8TDM6 1919 aa12.67□□□□□ -0.38
VPS25-202ENST00000589219 CFAP44Q96MT7 982 aa12.67□□□□□ -0.38
VPS25-202ENST00000589219 CHMP4BQ9H444 224 aaKnown RBP12.67□□□□□ -0.38
VPS25-202ENST00000589219 RWDD1Q9H446 243 aaPredicted RBP12.67□□□□□ -0.38
VPS25-202ENST00000589219 KDRP35968 1356 aa12.67□□□□□ -0.38
VPS25-202ENST00000589219 MAP3K19Q56UN5 1328 aa12.66□□□□□ -0.38
VPS25-202ENST00000589219 APBA3O96018 575 aa12.66□□□□□ -0.38
VPS25-202ENST00000589219 TRIM27P14373 513 aa12.66□□□□□ -0.38
VPS25-202ENST00000589219 PSDA5PKW4 1024 aaPredicted RBP12.65□□□□□ -0.38
VPS25-202ENST00000589219 EZH2Q15910 746 aaKnown RBP12.65□□□□□ -0.38
VPS25-202ENST00000589219 TOM1L2Q6ZVM7 507 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 ARHGAP45Q92619 1136 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 DDRGK1Q96HY6 314 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 CAMKK2Q96RR4 588 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 TNNQ9UQP3 1299 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 COL18A1P39060 1754 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 LRRC37A3O60309 1634 aa12.65□□□□□ -0.38
VPS25-202ENST00000589219 IGSF1Q8N6C5 1336 aa12.64□□□□□ -0.39
VPS25-202ENST00000589219 IGHDP01880 384 aa12.64□□□□□ -0.39
VPS25-202ENST00000589219 SULT6B1Q6IMI4 303 aa12.64□□□□□ -0.39
VPS25-202ENST00000589219 ARHGEF25Q86VW2 580 aa12.64□□□□□ -0.39
VPS25-202ENST00000589219 CDCA7Q9BWT1 371 aaPredicted RBP12.64□□□□□ -0.39
VPS25-202ENST00000589219 MBIPQ9NS73 344 aa12.64□□□□□ -0.39
VPS25-202ENST00000589219 RGPD5Q99666 1765 aa12.64□□□□□ -0.39
VPS25-202ENST00000589219 WDR17Q8IZU2 1322 aa12.63□□□□□ -0.39
VPS25-202ENST00000589219 R3HDM1Q15032 1099 aaKnown RBP12.63□□□□□ -0.39
VPS25-202ENST00000589219 DDB1Q16531 1140 aa12.63□□□□□ -0.39
VPS25-202ENST00000589219 C8orf34Q49A92 452 aa12.63□□□□□ -0.39
VPS25-202ENST00000589219 ITPRIPQ8IWB1 547 aa12.63□□□□□ -0.39
VPS25-202ENST00000589219 NOB1Q9ULX3 412 aaKnown RBP12.63□□□□□ -0.39
VPS25-202ENST00000589219 OVOS2A0A0G2JMS6 1433 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 NFAT5O94916 1531 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 VAMP4O75379 141 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 CSB-PGBD3P0DP91 1061 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 RGS3P49796 1198 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 HDAC1Q13547 482 aaPredicted RBP12.62□□□□□ -0.39
VPS25-202ENST00000589219 HSP90AB2PQ58FF8 381 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 NBPF14Q5TI25 921 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 AEBP1Q8IUX7 1158 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 MRPL50Q8N5N7 158 aaKnown RBP12.62□□□□□ -0.39
VPS25-202ENST00000589219 AXIN2Q9Y2T1 843 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 LAS1LQ9Y4W2 734 aaKnown RBP12.62□□□□□ -0.39
VPS25-202ENST00000589219 PCDHB15Q9Y5E8 787 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 WNK3Q9BYP7 1800 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 ABCC6O95255 1503 aa12.62□□□□□ -0.39
VPS25-202ENST00000589219 RREB1Q92766 1687 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 SBF2Q86WG5 1849 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 SOX12O15370 315 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 AMPHP49418 695 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 TWISTNBQ3B726 338 aaPredicted RBP12.61□□□□□ -0.39
VPS25-202ENST00000589219 SKAP1Q86WV1 359 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 GAS2L2Q8NHY3 880 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 THUMPD2Q9BTF0 503 aaKnown RBP12.61□□□□□ -0.39
VPS25-202ENST00000589219 CARD10Q9BWT7 1032 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 API5Q9BZZ5 524 aaKnown RBP12.61□□□□□ -0.39
VPS25-202ENST00000589219 ABCC4O15439 1325 aa12.61□□□□□ -0.39
VPS25-202ENST00000589219 TMEM57Q8N5G2 664 aa12.6□□□□□ -0.39
VPS25-202ENST00000589219 ZBTB47Q9UFB7 747 aaPredicted RBP12.6□□□□□ -0.39
VPS25-202ENST00000589219 HTATSF1O43719 755 aaKnown RBP12.59□□□□□ -0.39
VPS25-202ENST00000589219 NPM2Q86SE8 214 aaKnown RBP12.59□□□□□ -0.39
VPS25-202ENST00000589219 NUP188Q5SRE5 1749 aa12.59□□□□□ -0.39
VPS25-202ENST00000589219 RGPD3A6NKT7 1758 aaPredicted RBP12.58□□□□□ -0.39
VPS25-202ENST00000589219 RGPD4Q7Z3J3 1758 aa12.58□□□□□ -0.39
VPS25-202ENST00000589219 HOXC9P31274 260 aa12.58□□□□□ -0.4
VPS25-202ENST00000589219 ZBTB40Q9NUA8 1239 aa12.58□□□□□ -0.4
VPS25-202ENST00000589219 PDZRN3Q9UPQ7 1066 aa12.58□□□□□ -0.4
VPS25-202ENST00000589219 LTN1O94822 1766 aa12.58□□□□□ -0.4
VPS25-202ENST00000589219 EXOC5O00471 708 aa12.57□□□□□ -0.4
VPS25-202ENST00000589219 CHL1O00533 1208 aa12.57□□□□□ -0.4
VPS25-202ENST00000589219 PLSCR1O15162 318 aa12.57□□□□□ -0.4
VPS25-202ENST00000589219 BCL11BQ9C0K0 894 aaPredicted RBP12.57□□□□□ -0.4
VPS25-202ENST00000589219 BCL9O00512 1426 aa12.56□□□□□ -0.4
VPS25-202ENST00000589219 SMC5Q8IY18 1101 aa12.56□□□□□ -0.4
VPS25-202ENST00000589219 TSPYL6Q8N831 410 aa12.56□□□□□ -0.4
VPS25-202ENST00000589219 RTF1Q92541 710 aaKnown RBP12.56□□□□□ -0.4
VPS25-202ENST00000589219 EYA1Q99502 592 aa12.56□□□□□ -0.4
VPS25-202ENST00000589219 SOS1Q07889 1333 aaPredicted RBP12.56□□□□□ -0.4
VPS25-202ENST00000589219 MARCH10Q8NA82 808 aaPredicted RBP12.55□□□□□ -0.4
VPS25-202ENST00000589219 C8orf58Q8NAV2 365 aa12.55□□□□□ -0.4
VPS25-202ENST00000589219 PTPRCP08575 1304 aa12.55□□□□□ -0.4
VPS25-202ENST00000589219 MAP3K5Q99683 1374 aa12.55□□□□□ -0.4
VPS25-202ENST00000589219 DCTN1Q14203 1278 aa12.54□□□□□ -0.4
VPS25-202ENST00000589219 MTHFSDQ2M296 383 aaKnown RBP12.54□□□□□ -0.4
VPS25-202ENST00000589219 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
VPS25-202ENST00000589219 ERBB3P21860 1342 aa12.54□□□□□ -0.4
VPS25-202ENST00000589219 NCAPD2Q15021 1401 aa12.54□□□□□ -0.4
VPS25-202ENST00000589219 MCM10Q7L590 875 aa12.53□□□□□ -0.4
VPS25-202ENST00000589219 NLRP2Q9NX02 1062 aa12.53□□□□□ -0.4
VPS25-202ENST00000589219 FAM208AQ9UK61 1670 aaKnown RBP12.53□□□□□ -0.4
VPS25-202ENST00000589219 TNS2Q63HR2 1409 aa12.53□□□□□ -0.4
VPS25-202ENST00000589219 IP6K1Q92551 441 aa12.52□□□□□ -0.41
VPS25-202ENST00000589219 GCC1Q96CN9 775 aa12.52□□□□□ -0.41
VPS25-202ENST00000589219 KAT6BQ8WYB5 2073 aa12.51□□□□□ -0.41
VPS25-202ENST00000589219 ZBTB7BO15156 539 aaPredicted RBP12.51□□□□□ -0.41
VPS25-202ENST00000589219 IL2RBP14784 551 aa12.51□□□□□ -0.41
VPS25-202ENST00000589219 ANKRD24Q8TF21 1146 aa12.51□□□□□ -0.41
VPS25-202ENST00000589219 UPF2Q9HAU5 1272 aaKnown RBP12.51□□□□□ -0.41
VPS25-202ENST00000589219 SPON1Q9HCB6 807 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms