RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 C1orf141Q5JVX7 400 aa13.51□□□□□ -0.25
SS18-217ENST00000580958 ZKSCAN2Q63HK3 967 aa13.51□□□□□ -0.25
SS18-217ENST00000580958 ZNF428Q96B54 188 aa13.51□□□□□ -0.25
SS18-217ENST00000580958 WNK3Q9BYP7 1800 aa13.5□□□□□ -0.25
SS18-217ENST00000580958 CEMIPQ8WUJ3 1361 aa13.5□□□□□ -0.25
SS18-217ENST00000580958 UBAP1LF5GYI3 381 aa13.5□□□□□ -0.25
SS18-217ENST00000580958 KRT24Q2M2I5 525 aa13.5□□□□□ -0.25
SS18-217ENST00000580958 LGR6Q9HBX8 967 aa13.5□□□□□ -0.25
SS18-217ENST00000580958 OVOS2A0A0G2JMS6 1433 aa13.49□□□□□ -0.25
SS18-217ENST00000580958 TAF7Q15545 349 aaPredicted RBP13.49□□□□□ -0.25
SS18-217ENST00000580958 MPRIPQ6WCQ1 1025 aa13.49□□□□□ -0.25
SS18-217ENST00000580958 TOM1L2Q6ZVM7 507 aa13.49□□□□□ -0.25
SS18-217ENST00000580958 MRPL50Q8N5N7 158 aaKnown RBP13.49□□□□□ -0.25
SS18-217ENST00000580958 PLEKHG2Q9H7P9 1386 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 NRAPQ86VF7 1730 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 KIF16BQ96L93 1317 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 TCERG1O14776 1098 aaKnown RBP13.48□□□□□ -0.25
SS18-217ENST00000580958 RNMTO43148 476 aaKnown RBP13.48□□□□□ -0.25
SS18-217ENST00000580958 RLBP1P12271 317 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 PELP1Q8IZL8 1130 aaKnown RBP13.48□□□□□ -0.25
SS18-217ENST00000580958 STRN4Q9NRL3 753 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 BABAM1Q9NWV8 329 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 NOB1Q9ULX3 412 aaKnown RBP13.48□□□□□ -0.25
SS18-217ENST00000580958 SPG7Q9UQ90 795 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 COG6Q9Y2V7 657 aa13.48□□□□□ -0.25
SS18-217ENST00000580958 BRPF1P55201 1214 aaPredicted RBP13.47□□□□□ -0.25
SS18-217ENST00000580958 EVA1CP58658 441 aa13.47□□□□□ -0.25
SS18-217ENST00000580958 LARP1Q6PKG0 1096 aaKnown RBP13.47□□□□□ -0.25
SS18-217ENST00000580958 CLUAP1Q96AJ1 413 aa13.47□□□□□ -0.25
SS18-217ENST00000580958 MS4A1P11836 297 aa13.46□□□□□ -0.25
SS18-217ENST00000580958 ATF7IPQ6VMQ6 1270 aa13.46□□□□□ -0.25
SS18-217ENST00000580958 DZIP1LQ8IYY4 767 aaKnown RBP13.46□□□□□ -0.25
SS18-217ENST00000580958 CARD10Q9BWT7 1032 aa13.46□□□□□ -0.25
SS18-217ENST00000580958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.46□□□□□ -0.25
SS18-217ENST00000580958 KDM6AO15550 1401 aaPredicted RBP13.46□□□□□ -0.26
SS18-217ENST00000580958 HAX1O00165 279 aa13.45□□□□□ -0.26
SS18-217ENST00000580958 IPO8O15397 1037 aaKnown RBP13.45□□□□□ -0.26
SS18-217ENST00000580958 TRIM27P14373 513 aa13.45□□□□□ -0.26
SS18-217ENST00000580958 PHKG2P15735 406 aa13.45□□□□□ -0.26
SS18-217ENST00000580958 TEFQ10587 303 aa13.45□□□□□ -0.26
SS18-217ENST00000580958 FTSJ3Q8IY81 847 aaKnown RBP13.45□□□□□ -0.26
SS18-217ENST00000580958 BTG4Q9NY30 223 aa13.45□□□□□ -0.26
SS18-217ENST00000580958 NWD2Q9ULI1 1742 aa13.44□□□□□ -0.26
SS18-217ENST00000580958 IFNL2Q8IZJ0 200 aa13.44□□□□□ -0.26
SS18-217ENST00000580958 MVPQ14764 893 aaKnown RBP13.43□□□□□ -0.26
SS18-217ENST00000580958 MRC1P22897 1456 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 BTBD11A6QL63 1104 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 CYP27B1O15528 508 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 IL2RBP14784 551 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 TMEM57Q8N5G2 664 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 CERKQ8TCT0 537 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 ARHGAP45Q92619 1136 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 C5P01031 1676 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 KAT6BQ8WYB5 2073 aa13.42□□□□□ -0.26
SS18-217ENST00000580958 N4BP2Q86UW6 1770 aaPredicted RBP13.41□□□□□ -0.26
SS18-217ENST00000580958 NUTM2BA6NNL0 878 aaPredicted RBP13.41□□□□□ -0.26
SS18-217ENST00000580958 NUTM2EB1AL46 878 aaPredicted RBP13.41□□□□□ -0.26
SS18-217ENST00000580958 KCNQ3O43525 872 aa13.41□□□□□ -0.26
SS18-217ENST00000580958 ADAMTS2O95450 1211 aa13.41□□□□□ -0.26
SS18-217ENST00000580958 NUTM2AQ8IVF1 878 aaPredicted RBP13.41□□□□□ -0.26
SS18-217ENST00000580958 ZCRB1Q8TBF4 217 aaKnown RBP13.41□□□□□ -0.26
SS18-217ENST00000580958 TOGARAM1Q9Y4F4 1720 aa13.41□□□□□ -0.26
SS18-217ENST00000580958 SOS1Q07889 1333 aaPredicted RBP13.4□□□□□ -0.26
SS18-217ENST00000580958 HSP90AB1P08238 724 aaKnown RBP13.4□□□□□ -0.26
SS18-217ENST00000580958 EIF4A1P60842 406 aaKnown RBP13.4□□□□□ -0.26
SS18-217ENST00000580958 ITPRIPQ8IWB1 547 aa13.4□□□□□ -0.26
SS18-217ENST00000580958 ITGB4P16144 1822 aa13.4□□□□□ -0.26
SS18-217ENST00000580958 PCDH11XQ9BZA7 1347 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 PCDH11YQ9BZA8 1340 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 AAMPQ13685 434 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 DCAF5Q96JK2 942 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 API5Q9BZZ5 524 aaKnown RBP13.39□□□□□ -0.27
SS18-217ENST00000580958 SLC52A2Q9HAB3 445 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 USP35Q9P2H5 1018 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 DISP2A7MBM2 1401 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 ABCC4O15439 1325 aa13.39□□□□□ -0.27
SS18-217ENST00000580958 JCADQ9P266 1359 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 CCDC30Q5VVM6 783 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 NECTIN2Q92692 538 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 DDX19BQ9UMR2 479 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 PAPPAQ13219 1627 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 RGS12O14924 1447 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 KDM2BQ8NHM5 1336 aa13.38□□□□□ -0.27
SS18-217ENST00000580958 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
SS18-217ENST00000580958 G2E3Q7L622 706 aa13.37□□□□□ -0.27
SS18-217ENST00000580958 STK31Q9BXU1 1019 aa13.37□□□□□ -0.27
SS18-217ENST00000580958 LAMB4A4D0S4 1761 aa13.37□□□□□ -0.27
SS18-217ENST00000580958 UBR2Q8IWV8 1755 aa13.37□□□□□ -0.27
SS18-217ENST00000580958 SLIT2O94813 1529 aa13.36□□□□□ -0.27
SS18-217ENST00000580958 HOXB7P09629 217 aa13.36□□□□□ -0.27
SS18-217ENST00000580958 HDGFL1Q5TGJ6 251 aa13.36□□□□□ -0.27
SS18-217ENST00000580958 CENPQQ7L2Z9 268 aaPredicted RBP13.36□□□□□ -0.27
SS18-217ENST00000580958 NFATC2IPQ8NCF5 419 aa13.36□□□□□ -0.27
SS18-217ENST00000580958 PTPRCP08575 1304 aa13.36□□□□□ -0.27
SS18-217ENST00000580958 HEG1Q9ULI3 1381 aa13.35□□□□□ -0.27
SS18-217ENST00000580958 CABP4P57796 275 aa13.35□□□□□ -0.27
SS18-217ENST00000580958 SLC39A6Q13433 755 aa13.35□□□□□ -0.27
SS18-217ENST00000580958 DDX54Q8TDD1 881 aaKnown RBP13.35□□□□□ -0.27
SS18-217ENST00000580958 PCDHB15Q9Y5E8 787 aa13.35□□□□□ -0.27
SS18-217ENST00000580958 GLI3P10071 1580 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms