RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 AEBP1Q8IUX7 1158 aa24.09■■□□□ 1.45
CIITA-206ENST00000571190 MAP2P11137 1827 aaKnown RBP24.09■■□□□ 1.45
CIITA-206ENST00000571190 ITGB4P16144 1822 aa24.09■■□□□ 1.45
CIITA-206ENST00000571190 TAF1LQ8IZX4 1826 aa24.08■■□□□ 1.45
CIITA-206ENST00000571190 PLEKHO1Q53GL0 409 aaPredicted RBP24.08■■□□□ 1.45
CIITA-206ENST00000571190 DCAF5Q96JK2 942 aa24.08■■□□□ 1.45
CIITA-206ENST00000571190 KDM6AO15550 1401 aaPredicted RBP24.07■■□□□ 1.44
CIITA-206ENST00000571190 ZNF530Q6P9A1 599 aaPredicted RBP24.06■■□□□ 1.44
CIITA-206ENST00000571190 GOLGB1Q14789 3259 aaKnown RBP24.06■■□□□ 1.44
CIITA-206ENST00000571190 HSP90AB1P08238 724 aaKnown RBP24.05■■□□□ 1.44
CIITA-206ENST00000571190 AMOTQ4VCS5 1084 aa24.05■■□□□ 1.44
CIITA-206ENST00000571190 IL13P35225 146 aa24.03■■□□□ 1.44
CIITA-206ENST00000571190 AMER1Q5JTC6 1135 aaPredicted RBP24.03■■□□□ 1.44
CIITA-206ENST00000571190 RBM42Q9BTD8 480 aaKnown RBP24.03■■□□□ 1.44
CIITA-206ENST00000571190 KNSTRNQ9Y448 316 aa24.03■■□□□ 1.44
CIITA-206ENST00000571190 CHD4Q14839 1912 aa24.02■■□□□ 1.44
CIITA-206ENST00000571190 UBR3Q6ZT12 1888 aa24.02■■□□□ 1.44
CIITA-206ENST00000571190 CABP4P57796 275 aa24.01■■□□□ 1.43
CIITA-206ENST00000571190 RC3H1Q5TC82 1133 aaKnown RBP24.01■■□□□ 1.43
CIITA-206ENST00000571190 SULT6B1Q6IMI4 303 aa24.01■■□□□ 1.43
CIITA-206ENST00000571190 WWC3Q9ULE0 1092 aa24.01■■□□□ 1.43
CIITA-206ENST00000571190 RTCBQ9Y3I0 505 aaKnown RBP24■■□□□ 1.43
CIITA-206ENST00000571190 GIGYF1O75420 1035 aaPredicted RBP23.99■■□□□ 1.43
CIITA-206ENST00000571190 MMP10P09238 476 aa23.99■■□□□ 1.43
CIITA-206ENST00000571190 MTHFSP49914 203 aa23.99■■□□□ 1.43
CIITA-206ENST00000571190 TRAPPC3LQ5T215 181 aa23.99■■□□□ 1.43
CIITA-206ENST00000571190 ARHGEF1Q92888 912 aaKnown RBP23.99■■□□□ 1.43
CIITA-206ENST00000571190 SENP3-EIF4A1A0A087X0R7 540 aa23.98■■□□□ 1.43
CIITA-206ENST00000571190 KIF7Q2M1P5 1343 aa23.98■■□□□ 1.43
CIITA-206ENST00000571190 CNTNAP4Q9C0A0 1308 aa23.98■■□□□ 1.43
CIITA-206ENST00000571190 RPS6KA4O75676 772 aa23.97■■□□□ 1.43
CIITA-206ENST00000571190 C1orf141Q5JVX7 400 aa23.97■■□□□ 1.43
CIITA-206ENST00000571190 NFATC2IPQ8NCF5 419 aa23.97■■□□□ 1.43
CIITA-206ENST00000571190 ATP10DQ9P241 1426 aa23.96■■□□□ 1.43
CIITA-206ENST00000571190 PER1O15534 1290 aaPredicted RBP23.95■■□□□ 1.42
CIITA-206ENST00000571190 PTCD1O75127 700 aaKnown RBP23.95■■□□□ 1.42
CIITA-206ENST00000571190 ADRA2BP18089 450 aa23.95■■□□□ 1.42
CIITA-206ENST00000571190 NLGN1Q8N2Q7 840 aa23.95■■□□□ 1.42
CIITA-206ENST00000571190 ADCY9O60503 1353 aa23.94■■□□□ 1.42
CIITA-206ENST00000571190 GYS1P13807 737 aa23.94■■□□□ 1.42
CIITA-206ENST00000571190 CRKLP46109 303 aaKnown RBP23.91■■□□□ 1.42
CIITA-206ENST00000571190 PXDNLA1KZ92 1463 aa23.91■■□□□ 1.42
CIITA-206ENST00000571190 ZNF831Q5JPB2 1677 aa23.9■■□□□ 1.42
CIITA-206ENST00000571190 RFC4P35249 363 aa23.9■■□□□ 1.42
CIITA-206ENST00000571190 AKAP4Q5JQC9 854 aa23.9■■□□□ 1.42
CIITA-206ENST00000571190 LGR6Q9HBX8 967 aa23.9■■□□□ 1.42
CIITA-206ENST00000571190 TGFB2P61812 414 aa23.89■■□□□ 1.41
CIITA-206ENST00000571190 C10orf71Q711Q0 1435 aa23.88■■□□□ 1.41
CIITA-206ENST00000571190 A0A0G2JLW4 131 aa23.88■■□□□ 1.41
CIITA-206ENST00000571190 HMOX1P09601 288 aa23.88■■□□□ 1.41
CIITA-206ENST00000571190 INTS5Q6P9B9 1019 aaKnown RBP23.87■■□□□ 1.41
CIITA-206ENST00000571190 SLC52A2Q9HAB3 445 aa23.87■■□□□ 1.41
CIITA-206ENST00000571190 SRP68Q9UHB9 627 aaKnown RBP23.87■■□□□ 1.41
CIITA-206ENST00000571190 CICQ96RK0 1608 aaPredicted RBP23.87■■□□□ 1.41
CIITA-206ENST00000571190 GPBP1L1Q9HC44 474 aaPredicted RBP23.86■■□□□ 1.41
CIITA-206ENST00000571190 RNMTO43148 476 aaKnown RBP23.85■■□□□ 1.41
CIITA-206ENST00000571190 DPEP1P16444 411 aa23.85■■□□□ 1.41
CIITA-206ENST00000571190 CC2D1BQ5T0F9 858 aaKnown RBP23.85■■□□□ 1.41
CIITA-206ENST00000571190 ZNF526Q8TF50 670 aaPredicted RBP23.85■■□□□ 1.41
CIITA-206ENST00000571190 CCDC87Q9NVE4 849 aa23.85■■□□□ 1.41
CIITA-206ENST00000571190 FKBP8Q14318 412 aa23.84■■□□□ 1.41
CIITA-206ENST00000571190 MTHFSDQ2M296 383 aaKnown RBP23.84■■□□□ 1.41
CIITA-206ENST00000571190 DNAJC10Q8IXB1 793 aa23.84■■□□□ 1.41
CIITA-206ENST00000571190 PARP3Q9Y6F1 533 aa23.84■■□□□ 1.41
CIITA-206ENST00000571190 COL5A3P25940 1745 aaPredicted RBP23.84■■□□□ 1.41
CIITA-206ENST00000571190 USP42Q9H9J4 1324 aaKnown RBP23.84■■□□□ 1.41
CIITA-206ENST00000571190 KCNA3P22001 575 aa23.83■■□□□ 1.41
CIITA-206ENST00000571190 SLC39A6Q13433 755 aa23.83■■□□□ 1.41
CIITA-206ENST00000571190 BCS1LQ9Y276 419 aa23.83■■□□□ 1.41
CIITA-206ENST00000571190 DIAPH1O60610 1272 aaKnown RBP23.82■■□□□ 1.4
CIITA-206ENST00000571190 DDR1Q08345 913 aa23.82■■□□□ 1.4
CIITA-206ENST00000571190 CYP19A1P11511 503 aaPredicted RBP23.8■■□□□ 1.4
CIITA-206ENST00000571190 KIAA1551Q9HCM1 1747 aa23.8■■□□□ 1.4
CIITA-206ENST00000571190 MRC1P22897 1456 aa23.8■■□□□ 1.4
CIITA-206ENST00000571190 MYH14Q7Z406 1995 aaKnown RBP23.78■■□□□ 1.4
CIITA-206ENST00000571190 TM4SF1P30408 202 aa23.78■■□□□ 1.4
CIITA-206ENST00000571190 C4AP0C0L4 1744 aa23.78■■□□□ 1.4
CIITA-206ENST00000571190 SOS1Q07889 1333 aaPredicted RBP23.78■■□□□ 1.4
CIITA-206ENST00000571190 NPC1L1Q9UHC9 1359 aa23.78■■□□□ 1.4
CIITA-206ENST00000571190 TJP1Q07157 1748 aa23.77■■□□□ 1.4
CIITA-206ENST00000571190 KIF3CO14782 793 aa23.77■■□□□ 1.4
CIITA-206ENST00000571190 KIF13BQ9NQT8 1826 aa23.76■■□□□ 1.39
CIITA-206ENST00000571190 POLRMTO00411 1230 aaKnown RBP23.76■■□□□ 1.39
CIITA-206ENST00000571190 FCHSD2O94868 740 aa23.76■■□□□ 1.39
CIITA-206ENST00000571190 COL3A1P02461 1466 aaPredicted RBP23.75■■□□□ 1.39
CIITA-206ENST00000571190 USPL1Q5W0Q7 1092 aa23.75■■□□□ 1.39
CIITA-206ENST00000571190 ARHGAP27Q6ZUM4 889 aa23.75■■□□□ 1.39
CIITA-206ENST00000571190 KCPQ6ZWJ8 1503 aa23.74■■□□□ 1.39
CIITA-206ENST00000571190 ZBTB1Q9Y2K1 713 aa23.74■■□□□ 1.39
CIITA-206ENST00000571190 CNGB1Q14028 1251 aaPredicted RBP23.73■■□□□ 1.39
CIITA-206ENST00000571190 VSIG10Q8N0Z9 540 aa23.72■■□□□ 1.39
CIITA-206ENST00000571190 IL17REQ8NFR9 667 aa23.72■■□□□ 1.39
CIITA-206ENST00000571190 BCL2L12Q9HB09 334 aa23.72■■□□□ 1.39
CIITA-206ENST00000571190 PIM2Q9P1W9 311 aa23.72■■□□□ 1.39
CIITA-206ENST00000571190 ADAMTS7Q9UKP4 1686 aa23.72■■□□□ 1.39
CIITA-206ENST00000571190 SCN11AQ9UI33 1791 aa23.72■■□□□ 1.39
CIITA-206ENST00000571190 ZPR1O75312 459 aa23.71■■□□□ 1.39
CIITA-206ENST00000571190 CHRNA5P30532 468 aa23.71■■□□□ 1.39
CIITA-206ENST00000571190 NARFQ9UHQ1 456 aa23.71■■□□□ 1.39
CIITA-206ENST00000571190 U2SURPO15042 1029 aaKnown RBP23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms