RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PSEN2P49810 448 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 ZDHHC16Q969W1 377 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 MPHOSPH9Q99550 1183 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 SYT17Q9BSW7 474 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 TRAK1Q9UPV9 953 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 PARP4Q9UKK3 1724 aaKnown RBP8.66□□□□□ -1.02
VPS53-208ENST00000570650 CHD4Q14839 1912 aa8.65□□□□□ -1.02
VPS53-208ENST00000570650 PBX2P40425 430 aa8.65□□□□□ -1.02
VPS53-208ENST00000570650 NUTM2GQ5VZR2 741 aa8.65□□□□□ -1.02
VPS53-208ENST00000570650 FHDC1Q9C0D6 1143 aaPredicted RBP8.65□□□□□ -1.02
VPS53-208ENST00000570650 PDGFDQ9GZP0 370 aaPredicted RBP8.65□□□□□ -1.02
VPS53-208ENST00000570650 BCL2L12Q9HB09 334 aa8.65□□□□□ -1.02
VPS53-208ENST00000570650 ADGRB1O14514 1584 aa8.65□□□□□ -1.03
VPS53-208ENST00000570650 CPDO75976 1380 aa8.64□□□□□ -1.03
VPS53-208ENST00000570650 ARHGAP33O14559 1287 aa8.64□□□□□ -1.03
VPS53-208ENST00000570650 TYW1BQ6NUM6 668 aa8.64□□□□□ -1.03
VPS53-208ENST00000570650 KCNK17Q96T54 332 aa8.64□□□□□ -1.03
VPS53-208ENST00000570650 LMO7Q8WWI1 1683 aa8.64□□□□□ -1.03
VPS53-208ENST00000570650 ITSN1Q15811 1721 aa8.63□□□□□ -1.03
VPS53-208ENST00000570650 PEAK1Q9H792 1746 aa8.63□□□□□ -1.03
VPS53-208ENST00000570650 GRXCR2A6NFK2 248 aa8.63□□□□□ -1.03
VPS53-208ENST00000570650 PRIM1P49642 420 aaKnown RBP8.63□□□□□ -1.03
VPS53-208ENST00000570650 LSM11P83369 360 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS53-208ENST00000570650 DMRTA1Q5VZB9 504 aa8.63□□□□□ -1.03
VPS53-208ENST00000570650 NUDT16Q96DE0 195 aaKnown RBP8.63□□□□□ -1.03
VPS53-208ENST00000570650 STK32BQ9NY57 414 aa8.63□□□□□ -1.03
VPS53-208ENST00000570650 COL5A2P05997 1499 aaPredicted RBP8.63□□□□□ -1.03
VPS53-208ENST00000570650 CRB1P82279 1406 aa8.63□□□□□ -1.03
VPS53-208ENST00000570650 USP19O94966 1318 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 SBF2Q86WG5 1849 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 GIGYF1O75420 1035 aaPredicted RBP8.62□□□□□ -1.03
VPS53-208ENST00000570650 MLLT3P42568 568 aaPredicted RBP8.62□□□□□ -1.03
VPS53-208ENST00000570650 NBR1Q14596 966 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 DDB1Q16531 1140 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 ABTB2Q8N961 1025 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 EPAS1Q99814 870 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 MTFR1LQ9H019 292 aa8.62□□□□□ -1.03
VPS53-208ENST00000570650 POLR3AO14802 1390 aaPredicted RBP8.61□□□□□ -1.03
VPS53-208ENST00000570650 ACEP12821 1306 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 SLC15A2Q16348 729 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 TXNRD1Q16881 649 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 ANKRD13DQ6ZTN6 518 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 PTF1AQ7RTS3 328 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 FBXW7Q969H0 707 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 BCL9O00512 1426 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 LRRC37A3O60309 1634 aa8.61□□□□□ -1.03
VPS53-208ENST00000570650 SEMA3EO15041 775 aa8.6□□□□□ -1.03
VPS53-208ENST00000570650 GCP02774 474 aa8.6□□□□□ -1.03
VPS53-208ENST00000570650 NLRP13Q86W25 1043 aa8.6□□□□□ -1.03
VPS53-208ENST00000570650 SPNS2Q8IVW8 549 aa8.6□□□□□ -1.03
VPS53-208ENST00000570650 ARXQ96QS3 562 aa8.6□□□□□ -1.03
VPS53-208ENST00000570650 MAP3K5Q99683 1374 aa8.6□□□□□ -1.03
VPS53-208ENST00000570650 PLEKHG3A1L390 1219 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 OSBPP22059 807 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 PTPREP23469 700 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 GPR162Q16538 588 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 TOM1L2Q6ZVM7 507 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 CDCA7Q9BWT1 371 aaPredicted RBP8.59□□□□□ -1.03
VPS53-208ENST00000570650 CDK19Q9BWU1 502 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 AATKQ6ZMQ8 1374 aa8.59□□□□□ -1.03
VPS53-208ENST00000570650 UTRNP46939 3433 aa8.58□□□□□ -1.04
VPS53-208ENST00000570650 ZBTB7CA1YPR0 619 aa8.58□□□□□ -1.04
VPS53-208ENST00000570650 MARCH10Q8NA82 808 aaPredicted RBP8.58□□□□□ -1.04
VPS53-208ENST00000570650 TOPAZ1Q8N9V7 1692 aa8.57□□□□□ -1.04
VPS53-208ENST00000570650 COL9A1P20849 921 aa8.57□□□□□ -1.04
VPS53-208ENST00000570650 TSR1Q2NL82 804 aaKnown RBP8.57□□□□□ -1.04
VPS53-208ENST00000570650 C6orf132Q5T0Z8 1188 aa8.57□□□□□ -1.04
VPS53-208ENST00000570650 ARHGEF28Q8N1W1 1705 aaKnown RBP8.57□□□□□ -1.04
VPS53-208ENST00000570650 AKAP12Q02952 1782 aa8.56□□□□□ -1.04
VPS53-208ENST00000570650 MAP3K7O43318 606 aa8.56□□□□□ -1.04
VPS53-208ENST00000570650 ADGRD1Q6QNK2 874 aa8.56□□□□□ -1.04
VPS53-208ENST00000570650 STAC3Q96MF2 364 aa8.56□□□□□ -1.04
VPS53-208ENST00000570650 PLSCR2Q9NRY7 297 aa8.56□□□□□ -1.04
VPS53-208ENST00000570650 BRD4O60885 1362 aaPredicted RBP8.56□□□□□ -1.04
VPS53-208ENST00000570650 WDR17Q8IZU2 1322 aa8.55□□□□□ -1.04
VPS53-208ENST00000570650 WNK3Q9BYP7 1800 aa8.55□□□□□ -1.04
VPS53-208ENST00000570650 DCAF11Q8TEB1 546 aa8.55□□□□□ -1.04
VPS53-208ENST00000570650 SLIT3O75094 1523 aa8.54□□□□□ -1.04
VPS53-208ENST00000570650 TESPA1A2RU30 521 aaPredicted RBP8.54□□□□□ -1.04
VPS53-208ENST00000570650 PPP1R3GB7ZBB8 358 aa8.54□□□□□ -1.04
VPS53-208ENST00000570650 EXOC5O00471 708 aa8.54□□□□□ -1.04
VPS53-208ENST00000570650 ZBED2Q9BTP6 218 aa8.54□□□□□ -1.04
VPS53-208ENST00000570650 CDHR5Q9HBB8 845 aa8.54□□□□□ -1.04
VPS53-208ENST00000570650 SHANK3Q9BYB0 1731 aa8.54□□□□□ -1.04
VPS53-208ENST00000570650 TK2O00142 265 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 POLD1P28340 1107 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 SLC16A10Q8TF71 515 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 CARD10Q9BWT7 1032 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 VPS9D1Q9Y2B5 631 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 PAPPAQ13219 1627 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 PPIP5K1Q6PFW1 1433 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 COL18A1P39060 1754 aa8.53□□□□□ -1.04
VPS53-208ENST00000570650 CSB-PGBD3P0DP91 1061 aa8.52□□□□□ -1.05
VPS53-208ENST00000570650 SRPK2P78362 688 aaKnown RBP8.52□□□□□ -1.05
VPS53-208ENST00000570650 MMRN1Q13201 1228 aa8.52□□□□□ -1.05
VPS53-208ENST00000570650 ZNF827Q17R98 1081 aa8.52□□□□□ -1.05
VPS53-208ENST00000570650 PROX2Q3B8N5 592 aa8.52□□□□□ -1.05
VPS53-208ENST00000570650 USP6P35125 1406 aa8.52□□□□□ -1.05
VPS53-208ENST00000570650 CPSF1Q10570 1443 aaKnown RBP8.52□□□□□ -1.05
VPS53-208ENST00000570650 TNS2Q63HR2 1409 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms