RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PIM2Q9P1W9 311 aa15.57■□□□□ 0.08
VPS53-207ENST00000570510 SPG7Q9UQ90 795 aa15.57■□□□□ 0.08
VPS53-207ENST00000570510 HSPA1AP0DMV8 641 aaKnown RBP15.56■□□□□ 0.08
VPS53-207ENST00000570510 HSPA1BP0DMV9 641 aaKnown RBP15.56■□□□□ 0.08
VPS53-207ENST00000570510 RGPD2P0DJD1 1756 aa15.55■□□□□ 0.08
VPS53-207ENST00000570510 RFC4P35249 363 aa15.55■□□□□ 0.08
VPS53-207ENST00000570510 DALRD3Q5D0E6 543 aaKnown RBP15.55■□□□□ 0.08
VPS53-207ENST00000570510 PUS7Q96PZ0 661 aaKnown RBP15.55■□□□□ 0.08
VPS53-207ENST00000570510 SIN3AQ96ST3 1273 aa15.55■□□□□ 0.08
VPS53-207ENST00000570510 HSP90AB2PQ58FF8 381 aa15.54■□□□□ 0.08
VPS53-207ENST00000570510 ASAP1Q9ULH1 1129 aa15.54■□□□□ 0.08
VPS53-207ENST00000570510 UBR3Q6ZT12 1888 aa15.54■□□□□ 0.08
VPS53-207ENST00000570510 KCPQ6ZWJ8 1503 aa15.53■□□□□ 0.08
VPS53-207ENST00000570510 ITPK1Q13572 414 aa15.53■□□□□ 0.08
VPS53-207ENST00000570510 GGNBP2Q9H3C7 697 aa15.53■□□□□ 0.08
VPS53-207ENST00000570510 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
VPS53-207ENST00000570510 N4BP2Q86UW6 1770 aaPredicted RBP15.52■□□□□ 0.07
VPS53-207ENST00000570510 PCNTO95613 3336 aa15.51■□□□□ 0.07
VPS53-207ENST00000570510 INSRP06213 1382 aa15.51■□□□□ 0.07
VPS53-207ENST00000570510 SLC24A1O60721 1099 aa15.51■□□□□ 0.07
VPS53-207ENST00000570510 ADRA2BP18089 450 aa15.51■□□□□ 0.07
VPS53-207ENST00000570510 TOGARAM1Q9Y4F4 1720 aa15.51■□□□□ 0.07
VPS53-207ENST00000570510 C10orf71Q711Q0 1435 aa15.51■□□□□ 0.07
VPS53-207ENST00000570510 PPM1GO15355 546 aaPredicted RBP15.5■□□□□ 0.07
VPS53-207ENST00000570510 VEGFAP15692 232 aaPredicted RBP15.5■□□□□ 0.07
VPS53-207ENST00000570510 NKX1-1Q15270 411 aaPredicted RBP15.5■□□□□ 0.07
VPS53-207ENST00000570510 ARHGEF1Q92888 912 aaKnown RBP15.5■□□□□ 0.07
VPS53-207ENST00000570510 FLT4P35916 1363 aa15.49■□□□□ 0.07
VPS53-207ENST00000570510 DCAF5Q96JK2 942 aa15.49■□□□□ 0.07
VPS53-207ENST00000570510 FYB1O15117 783 aa15.48■□□□□ 0.07
VPS53-207ENST00000570510 GYS1P13807 737 aa15.48■□□□□ 0.07
VPS53-207ENST00000570510 IFNL2Q8IZJ0 200 aa15.48■□□□□ 0.07
VPS53-207ENST00000570510 KCNA3P22001 575 aa15.47■□□□□ 0.07
VPS53-207ENST00000570510 ATG3Q9NT62 314 aa15.47■□□□□ 0.07
VPS53-207ENST00000570510 ITGB4P16144 1822 aa15.47■□□□□ 0.07
VPS53-207ENST00000570510 RC3H1Q5TC82 1133 aaKnown RBP15.46■□□□□ 0.07
VPS53-207ENST00000570510 RPS6KA4O75676 772 aa15.45■□□□□ 0.06
VPS53-207ENST00000570510 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.45■□□□□ 0.06
VPS53-207ENST00000570510 KIF24Q5T7B8 1368 aa15.45■□□□□ 0.06
VPS53-207ENST00000570510 KIF13BQ9NQT8 1826 aa15.45■□□□□ 0.06
VPS53-207ENST00000570510 ZC3H4Q9UPT8 1303 aaKnown RBP15.44■□□□□ 0.06
VPS53-207ENST00000570510 GLTPD2A6NH11 291 aa15.44■□□□□ 0.06
VPS53-207ENST00000570510 CHRNA5P30532 468 aa15.44■□□□□ 0.06
VPS53-207ENST00000570510 PHKG2P15735 406 aa15.43■□□□□ 0.06
VPS53-207ENST00000570510 LMNB1P20700 586 aa15.43■□□□□ 0.06
VPS53-207ENST00000570510 DPY19L2Q6NUT2 758 aa15.43■□□□□ 0.06
VPS53-207ENST00000570510 TNRC6CQ9HCJ0 1690 aaKnown RBP15.43■□□□□ 0.06
VPS53-207ENST00000570510 C4AP0C0L4 1744 aa15.43■□□□□ 0.06
VPS53-207ENST00000570510 ST20-MTHFSA0A0A6YYL1 179 aa15.42■□□□□ 0.06
VPS53-207ENST00000570510 AIDAQ96BJ3 306 aa15.42■□□□□ 0.06
VPS53-207ENST00000570510 EMILIN1Q9Y6C2 1016 aa15.42■□□□□ 0.06
VPS53-207ENST00000570510 KIAA1551Q9HCM1 1747 aa15.42■□□□□ 0.06
VPS53-207ENST00000570510 CNTNAP4Q9C0A0 1308 aa15.42■□□□□ 0.06
VPS53-207ENST00000570510 PKD1L3Q7Z443 1732 aa15.41■□□□□ 0.06
VPS53-207ENST00000570510 RASSF7Q02833 373 aa15.41■□□□□ 0.06
VPS53-207ENST00000570510 MKRN1Q9UHC7 482 aaKnown RBP15.41■□□□□ 0.06
VPS53-207ENST00000570510 MAP2P11137 1827 aaKnown RBP15.4■□□□□ 0.06
VPS53-207ENST00000570510 ERVV-2B6SEH9 535 aa15.4■□□□□ 0.06
VPS53-207ENST00000570510 SLC34A2O95436 690 aa15.4■□□□□ 0.06
VPS53-207ENST00000570510 HSP90AB1P08238 724 aaKnown RBP15.4■□□□□ 0.06
VPS53-207ENST00000570510 FKBP8Q14318 412 aa15.4■□□□□ 0.06
VPS53-207ENST00000570510 ARFGEF1Q9Y6D6 1849 aa15.39■□□□□ 0.05
VPS53-207ENST00000570510 PTCD1O75127 700 aaKnown RBP15.39■□□□□ 0.05
VPS53-207ENST00000570510 ZPR1O75312 459 aa15.39■□□□□ 0.05
VPS53-207ENST00000570510 CABP4P57796 275 aa15.39■□□□□ 0.05
VPS53-207ENST00000570510 EYA1Q99502 592 aa15.39■□□□□ 0.05
VPS53-207ENST00000570510 SRP68Q9UHB9 627 aaKnown RBP15.39■□□□□ 0.05
VPS53-207ENST00000570510 SLC4A9Q96Q91 983 aa15.38■□□□□ 0.05
VPS53-207ENST00000570510 TESK2Q96S53 571 aa15.38■□□□□ 0.05
VPS53-207ENST00000570510 CREBZFQ9NS37 354 aa15.38■□□□□ 0.05
VPS53-207ENST00000570510 CRKLP46109 303 aaKnown RBP15.37■□□□□ 0.05
VPS53-207ENST00000570510 DDR1Q08345 913 aa15.37■□□□□ 0.05
VPS53-207ENST00000570510 USP42Q9H9J4 1324 aaKnown RBP15.37■□□□□ 0.05
VPS53-207ENST00000570510 KDRP35968 1356 aa15.36■□□□□ 0.05
VPS53-207ENST00000570510 TONSLQ96HA7 1378 aa15.36■□□□□ 0.05
VPS53-207ENST00000570510 BRCA1P38398 1863 aaKnown RBP15.36■□□□□ 0.05
VPS53-207ENST00000570510 CTCFP49711 727 aaPredicted RBP15.36■□□□□ 0.05
VPS53-207ENST00000570510 TTLL6Q8N841 843 aa15.36■□□□□ 0.05
VPS53-207ENST00000570510 PRDM10Q9NQV6 1147 aa15.36■□□□□ 0.05
VPS53-207ENST00000570510 FOXN1O15353 648 aa15.35■□□□□ 0.05
VPS53-207ENST00000570510 CDCA8Q53HL2 280 aa15.35■□□□□ 0.05
VPS53-207ENST00000570510 WASHC2AQ641Q2 1341 aa15.35■□□□□ 0.05
VPS53-207ENST00000570510 POLRMTO00411 1230 aaKnown RBP15.34■□□□□ 0.05
VPS53-207ENST00000570510 PLEKHO1Q53GL0 409 aaPredicted RBP15.34■□□□□ 0.05
VPS53-207ENST00000570510 CHADLQ6NUI6 762 aa15.34■□□□□ 0.05
VPS53-207ENST00000570510 H0YIN7 160 aa15.33■□□□□ 0.04
VPS53-207ENST00000570510 TM4SF1P30408 202 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 MTHFSP49914 203 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 FAM161AQ3B820 660 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 ERFEQ4G0M1 354 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 C1orf141Q5JVX7 400 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 USPL1Q5W0Q7 1092 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 ZNF530Q6P9A1 599 aaPredicted RBP15.32■□□□□ 0.04
VPS53-207ENST00000570510 C2CD5Q86YS7 1000 aa15.32■□□□□ 0.04
VPS53-207ENST00000570510 NCAPD2Q15021 1401 aa15.31■□□□□ 0.04
VPS53-207ENST00000570510 SBF1O95248 1867 aa15.31■□□□□ 0.04
VPS53-207ENST00000570510 KDM6AO15550 1401 aaPredicted RBP15.3■□□□□ 0.04
VPS53-207ENST00000570510 AMOTQ4VCS5 1084 aa15.3■□□□□ 0.04
VPS53-207ENST00000570510 PCDH10Q9P2E7 1040 aa15.3■□□□□ 0.04
VPS53-207ENST00000570510 ZNF219Q9P2Y4 722 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms