RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZNF594Q96JF6 807 aaPredicted RBP5.16□□□□□ -1.58
VPS35-208ENST00000568612 PPP1R12CQ9BZL4 782 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 GRIP2Q9C0E4 1043 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 TIMMDC1Q9NPL8 285 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 MKRN1Q9UHC7 482 aaKnown RBP5.16□□□□□ -1.58
VPS35-208ENST00000568612 RBM19Q9Y4C8 960 aaKnown RBP5.16□□□□□ -1.58
VPS35-208ENST00000568612 PCDHGA11Q9Y5H2 935 aa5.16□□□□□ -1.58
VPS35-208ENST00000568612 RFX1P22670 979 aa5.15□□□□□ -1.59
VPS35-208ENST00000568612 NBPF10Q6P3W6 841 aaKnown RBP5.15□□□□□ -1.59
VPS35-208ENST00000568612 PLEKHM2Q8IWE5 1019 aa5.15□□□□□ -1.59
VPS35-208ENST00000568612 OGFOD1Q8N543 542 aa5.15□□□□□ -1.59
VPS35-208ENST00000568612 NBPF15Q8N660 670 aa5.15□□□□□ -1.59
VPS35-208ENST00000568612 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.15□□□□□ -1.59
VPS35-208ENST00000568612 TPCN2Q8NHX9 752 aa5.15□□□□□ -1.59
VPS35-208ENST00000568612 DNAAF2Q9NVR5 837 aaKnown RBP5.15□□□□□ -1.59
VPS35-208ENST00000568612 MAFBQ9Y5Q3 323 aaPredicted RBP5.15□□□□□ -1.59
VPS35-208ENST00000568612 ERBB4Q15303 1308 aa5.15□□□□□ -1.59
VPS35-208ENST00000568612 SENP3-EIF4A1A0A087X0R7 540 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 ARID3CA6NKF2 412 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 TMEM229AB2RXF0 380 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 BACH1O14867 736 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 RASA1P20936 1047 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 ITGA6P23229 1130 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 SMTNP53814 917 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 FAM9AQ8IZU1 332 aaPredicted RBP5.14□□□□□ -1.59
VPS35-208ENST00000568612 FHDC1Q9C0D6 1143 aaPredicted RBP5.14□□□□□ -1.59
VPS35-208ENST00000568612 GPAMQ9HCL2 828 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 ZNF358Q9NW07 568 aa5.14□□□□□ -1.59
VPS35-208ENST00000568612 GMPRP36959 345 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 PLA2G4AP47712 749 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 CLDN10P78369 228 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 C4orf17Q53FE4 359 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 CDCA8Q53HL2 280 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 CCDC102BQ68D86 513 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 LARP1Q6PKG0 1096 aaKnown RBP5.13□□□□□ -1.59
VPS35-208ENST00000568612 SV2AQ7L0J3 742 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 VWA5B2Q8N398 1253 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 RHBDD1Q8TEB9 315 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 AIDAQ96BJ3 306 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 KIAA1024Q9UPX6 916 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 HRH3Q9Y5N1 445 aa5.13□□□□□ -1.59
VPS35-208ENST00000568612 A6NJY4 79 aa5.12□□□□□ -1.59
VPS35-208ENST00000568612 SPATA31C2B4DYI2 1134 aa5.12□□□□□ -1.59
VPS35-208ENST00000568612 LCE2CQ5TA81 110 aa5.12□□□□□ -1.59
VPS35-208ENST00000568612 PPARGC1BQ86YN6 1023 aaKnown RBP5.12□□□□□ -1.59
VPS35-208ENST00000568612 CCDC97Q96F63 343 aaPredicted RBP5.12□□□□□ -1.59
VPS35-208ENST00000568612 VRTNQ9H8Y1 702 aa5.12□□□□□ -1.59
VPS35-208ENST00000568612 CABP1Q9NZU7 370 aa5.12□□□□□ -1.59
VPS35-208ENST00000568612 DYRK1BQ9Y463 629 aa5.12□□□□□ -1.59
VPS35-208ENST00000568612 SFI1A8K8P3 1242 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 ZBTB7BO15156 539 aaPredicted RBP5.11□□□□□ -1.59
VPS35-208ENST00000568612 CSB-PGBD3P0DP91 1061 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 TBCELQ5QJ74 424 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 TNS4Q8IZW8 715 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 PGBD3Q8N328 593 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 LARGE2Q8N3Y3 721 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 NIFKQ9BYG3 293 aaKnown RBP5.11□□□□□ -1.59
VPS35-208ENST00000568612 CUEDC1Q9NWM3 386 aaPredicted RBP5.11□□□□□ -1.59
VPS35-208ENST00000568612 PARP3Q9Y6F1 533 aa5.11□□□□□ -1.59
VPS35-208ENST00000568612 A0A1B0GTH6 734 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 H7C1W4 665 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 F11P03951 625 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 WDR44Q5JSH3 913 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 CFAP70Q5T0N1 1121 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 LCE2AQ5TA79 106 aaPredicted RBP5.1□□□□□ -1.59
VPS35-208ENST00000568612 FOXR1Q6PIV2 292 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 GPR161Q8N6U8 529 aaKnown RBP5.1□□□□□ -1.59
VPS35-208ENST00000568612 SLC4A9Q96Q91 983 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 RUBCNLQ9H714 662 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 ZNF232Q9UNY5 417 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 USP3Q9Y6I4 520 aa5.1□□□□□ -1.59
VPS35-208ENST00000568612 USP17L15C9J2P7 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L10C9JJH3 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L13C9JLJ4 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L12C9JPN9 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L11C9JVI0 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L21D6R901 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L18D6R9N7 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L22D6RA61 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L17D6RBQ6 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L19D6RCP7 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L20D6RJB6 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 GPR25O00155 361 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 CDK2AP1O14519 115 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 EIF5BO60841 1220 aaKnown RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 LGR5O75473 907 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 VSIG8P0DPA2 414 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 MSX1P28360 303 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 USP17L24Q0WX57 530 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 DBN1Q16643 649 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 NBPF1Q3BBV0 1214 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 CRTC2Q53ET0 693 aaPredicted RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 KANK4Q5T7N3 995 aaPredicted RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 SLC9A9Q8IVB4 645 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 TRIM22Q8IYM9 498 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 TSEN2Q8NCE0 465 aaKnown RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 GTPBP3Q969Y2 492 aaKnown RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 ZNF837Q96EG3 531 aaPredicted RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 CNTNAP3BQ96NU0 1288 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 HINFPQ9BQA5 517 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms