RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SIN3AQ96ST3 1273 aa16.72■□□□□ 0.27
CLK3-222ENST00000568232 ZNF219Q9P2Y4 722 aaPredicted RBP16.72■□□□□ 0.27
CLK3-222ENST00000568232 GNPATO15228 680 aa16.71■□□□□ 0.27
CLK3-222ENST00000568232 FCHSD2O94868 740 aa16.71■□□□□ 0.27
CLK3-222ENST00000568232 DPEP1P16444 411 aa16.71■□□□□ 0.27
CLK3-222ENST00000568232 TGFB2P61812 414 aa16.71■□□□□ 0.27
CLK3-222ENST00000568232 N4BP2Q86UW6 1770 aaPredicted RBP16.71■□□□□ 0.27
CLK3-222ENST00000568232 NSD3Q9BZ95 1437 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 KIAA1551Q9HCM1 1747 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 LOC102724428A0A0B4J2F2 783 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 ABCB7O75027 752 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 SIK1P57059 783 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 ITPK1Q13572 414 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 RRAGCQ9HB90 399 aa16.7■□□□□ 0.26
CLK3-222ENST00000568232 KCPQ6ZWJ8 1503 aa16.69■□□□□ 0.26
CLK3-222ENST00000568232 NEUROD1Q13562 356 aa16.67■□□□□ 0.26
CLK3-222ENST00000568232 HSP90AB2PQ58FF8 381 aa16.67■□□□□ 0.26
CLK3-222ENST00000568232 ASAP1Q9ULH1 1129 aa16.67■□□□□ 0.26
CLK3-222ENST00000568232 RTL1A6NKG5 1358 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 HSPA1AP0DMV8 641 aaKnown RBP16.66■□□□□ 0.26
CLK3-222ENST00000568232 HSPA1BP0DMV9 641 aaKnown RBP16.66■□□□□ 0.26
CLK3-222ENST00000568232 KCNA3P22001 575 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 ATP6V1AP38606 617 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 C10orf71Q711Q0 1435 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 CARD11Q9BXL7 1154 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 FOXD4L1Q9NU39 408 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 ITGB4P16144 1822 aa16.66■□□□□ 0.26
CLK3-222ENST00000568232 SMG6Q86US8 1419 aaKnown RBP16.65■□□□□ 0.26
CLK3-222ENST00000568232 TMF1P82094 1093 aa16.65■□□□□ 0.26
CLK3-222ENST00000568232 MAP2P11137 1827 aaKnown RBP16.65■□□□□ 0.26
CLK3-222ENST00000568232 KIF13BQ9NQT8 1826 aa16.65■□□□□ 0.26
CLK3-222ENST00000568232 KDM2BQ8NHM5 1336 aa16.65■□□□□ 0.26
CLK3-222ENST00000568232 ZBTB22O15209 634 aa16.64■□□□□ 0.25
CLK3-222ENST00000568232 NLGN1Q8N2Q7 840 aa16.64■□□□□ 0.25
CLK3-222ENST00000568232 GGNBP2Q9H3C7 697 aa16.64■□□□□ 0.25
CLK3-222ENST00000568232 RNF181Q9P0P0 153 aa16.64■□□□□ 0.25
CLK3-222ENST00000568232 PLEKHG2Q9H7P9 1386 aa16.64■□□□□ 0.25
CLK3-222ENST00000568232 NKX1-1Q15270 411 aaPredicted RBP16.63■□□□□ 0.25
CLK3-222ENST00000568232 TRAPPC3LQ5T215 181 aa16.63■□□□□ 0.25
CLK3-222ENST00000568232 CCDC87Q9NVE4 849 aa16.63■□□□□ 0.25
CLK3-222ENST00000568232 SMC1BQ8NDV3 1235 aa16.62■□□□□ 0.25
CLK3-222ENST00000568232 TMOD3Q9NYL9 352 aa16.62■□□□□ 0.25
CLK3-222ENST00000568232 FYB1O15117 783 aa16.61■□□□□ 0.25
CLK3-222ENST00000568232 ARHGEF1Q92888 912 aaKnown RBP16.61■□□□□ 0.25
CLK3-222ENST00000568232 PUS7Q96PZ0 661 aaKnown RBP16.61■□□□□ 0.25
CLK3-222ENST00000568232 RTCBQ9Y3I0 505 aaKnown RBP16.61■□□□□ 0.25
CLK3-222ENST00000568232 INSRP06213 1382 aa16.61■□□□□ 0.25
CLK3-222ENST00000568232 GYS1P13807 737 aa16.6■□□□□ 0.25
CLK3-222ENST00000568232 DCAF5Q96JK2 942 aa16.6■□□□□ 0.25
CLK3-222ENST00000568232 ATG3Q9NT62 314 aa16.6■□□□□ 0.25
CLK3-222ENST00000568232 PIM2Q9P1W9 311 aa16.6■□□□□ 0.25
CLK3-222ENST00000568232 PARP3Q9Y6F1 533 aa16.6■□□□□ 0.25
CLK3-222ENST00000568232 SLC4A9Q96Q91 983 aa16.59■□□□□ 0.25
CLK3-222ENST00000568232 PKD1L3Q7Z443 1732 aa16.59■□□□□ 0.25
CLK3-222ENST00000568232 DALRD3Q5D0E6 543 aaKnown RBP16.58■□□□□ 0.24
CLK3-222ENST00000568232 SPG7Q9UQ90 795 aa16.58■□□□□ 0.24
CLK3-222ENST00000568232 C4AP0C0L4 1744 aa16.58■□□□□ 0.24
CLK3-222ENST00000568232 BRCA1P38398 1863 aaKnown RBP16.58■□□□□ 0.24
CLK3-222ENST00000568232 CHRNA5P30532 468 aa16.57■□□□□ 0.24
CLK3-222ENST00000568232 FLT4P35916 1363 aa16.56■□□□□ 0.24
CLK3-222ENST00000568232 RFC4P35249 363 aa16.56■□□□□ 0.24
CLK3-222ENST00000568232 SLC34A2O95436 690 aa16.55■□□□□ 0.24
CLK3-222ENST00000568232 RASSF7Q02833 373 aa16.55■□□□□ 0.24
CLK3-222ENST00000568232 TESK2Q96S53 571 aa16.55■□□□□ 0.24
CLK3-222ENST00000568232 RBM42Q9BTD8 480 aaKnown RBP16.55■□□□□ 0.24
CLK3-222ENST00000568232 EMILIN1Q9Y6C2 1016 aa16.55■□□□□ 0.24
CLK3-222ENST00000568232 ARFGEF1Q9Y6D6 1849 aa16.54■□□□□ 0.24
CLK3-222ENST00000568232 KDRP35968 1356 aa16.54■□□□□ 0.24
CLK3-222ENST00000568232 TNRC6CQ9HCJ0 1690 aaKnown RBP16.54■□□□□ 0.24
CLK3-222ENST00000568232 PHKG2P15735 406 aa16.54■□□□□ 0.24
CLK3-222ENST00000568232 RPS6KA4O75676 772 aa16.53■□□□□ 0.24
CLK3-222ENST00000568232 VEGFAP15692 232 aaPredicted RBP16.53■□□□□ 0.24
CLK3-222ENST00000568232 ST20-MTHFSA0A0A6YYL1 179 aa16.52■□□□□ 0.24
CLK3-222ENST00000568232 DDR1Q08345 913 aa16.52■□□□□ 0.24
CLK3-222ENST00000568232 FKBP8Q14318 412 aa16.52■□□□□ 0.24
CLK3-222ENST00000568232 RC3H1Q5TC82 1133 aaKnown RBP16.52■□□□□ 0.24
CLK3-222ENST00000568232 IFNL2Q8IZJ0 200 aa16.52■□□□□ 0.24
CLK3-222ENST00000568232 SRP68Q9UHB9 627 aaKnown RBP16.52■□□□□ 0.24
CLK3-222ENST00000568232 GLTPD2A6NH11 291 aa16.51■□□□□ 0.23
CLK3-222ENST00000568232 PPM1GO15355 546 aaPredicted RBP16.51■□□□□ 0.23
CLK3-222ENST00000568232 NCAPD2Q15021 1401 aa16.51■□□□□ 0.23
CLK3-222ENST00000568232 CNTNAP4Q9C0A0 1308 aa16.5■□□□□ 0.23
CLK3-222ENST00000568232 EYA1Q99502 592 aa16.5■□□□□ 0.23
CLK3-222ENST00000568232 KIF24Q5T7B8 1368 aa16.5■□□□□ 0.23
CLK3-222ENST00000568232 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLK3-222ENST00000568232 MKRN1Q9UHC7 482 aaKnown RBP16.49■□□□□ 0.23
CLK3-222ENST00000568232 SBF1O95248 1867 aa16.48■□□□□ 0.23
CLK3-222ENST00000568232 POTECB2RU33 542 aa16.48■□□□□ 0.23
CLK3-222ENST00000568232 TONSLQ96HA7 1378 aa16.48■□□□□ 0.23
CLK3-222ENST00000568232 KDM6AO15550 1401 aaPredicted RBP16.47■□□□□ 0.23
CLK3-222ENST00000568232 FOXN1O15353 648 aa16.47■□□□□ 0.23
CLK3-222ENST00000568232 ZC3H4Q9UPT8 1303 aaKnown RBP16.46■□□□□ 0.23
CLK3-222ENST00000568232 POLRMTO00411 1230 aaKnown RBP16.46■□□□□ 0.23
CLK3-222ENST00000568232 LMNB1P20700 586 aa16.46■□□□□ 0.23
CLK3-222ENST00000568232 USP42Q9H9J4 1324 aaKnown RBP16.45■□□□□ 0.22
CLK3-222ENST00000568232 COL5A3P25940 1745 aaPredicted RBP16.45■□□□□ 0.22
CLK3-222ENST00000568232 PTCD1O75127 700 aaKnown RBP16.45■□□□□ 0.22
CLK3-222ENST00000568232 CRKLP46109 303 aaKnown RBP16.45■□□□□ 0.22
CLK3-222ENST00000568232 ERVV-2B6SEH9 535 aa16.44■□□□□ 0.22
CLK3-222ENST00000568232 TM4SF1P30408 202 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms