RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 ZNF784Q8NCA9 323 aaPredicted RBP8.66□□□□□ -1.02
TCF4-228ENST00000565393 LGR6Q9HBX8 967 aa8.66□□□□□ -1.02
TCF4-228ENST00000565393 RGPD2P0DJD1 1756 aa8.66□□□□□ -1.02
TCF4-228ENST00000565393 NCAPD2Q15021 1401 aa8.65□□□□□ -1.02
TCF4-228ENST00000565393 MAP3K5Q99683 1374 aa8.65□□□□□ -1.02
TCF4-228ENST00000565393 AKAP4Q5JQC9 854 aa8.65□□□□□ -1.02
TCF4-228ENST00000565393 RC3H1Q5TC82 1133 aaKnown RBP8.65□□□□□ -1.02
TCF4-228ENST00000565393 NLGN1Q8N2Q7 840 aa8.65□□□□□ -1.02
TCF4-228ENST00000565393 ARHGEF1Q92888 912 aaKnown RBP8.65□□□□□ -1.02
TCF4-228ENST00000565393 WWC3Q9ULE0 1092 aa8.65□□□□□ -1.02
TCF4-228ENST00000565393 KIF20BQ96Q89 1820 aa8.65□□□□□ -1.02
TCF4-228ENST00000565393 MYOM1P52179 1685 aa8.65□□□□□ -1.03
TCF4-228ENST00000565393 DOT1LQ8TEK3 1739 aa8.64□□□□□ -1.03
TCF4-228ENST00000565393 RNMTO43148 476 aaKnown RBP8.64□□□□□ -1.03
TCF4-228ENST00000565393 RPS6KA4O75676 772 aa8.64□□□□□ -1.03
TCF4-228ENST00000565393 MMP10P09238 476 aa8.64□□□□□ -1.03
TCF4-228ENST00000565393 YBX3P16989 372 aaKnown RBP eCLIP8.64□□□□□ -1.03
TCF4-228ENST00000565393 MTHFSDQ2M296 383 aaKnown RBP8.64□□□□□ -1.03
TCF4-228ENST00000565393 SLC4A9Q96Q91 983 aa8.64□□□□□ -1.03
TCF4-228ENST00000565393 PAPPAQ13219 1627 aa8.63□□□□□ -1.03
TCF4-228ENST00000565393 CFAP53Q96M91 514 aa8.63□□□□□ -1.03
TCF4-228ENST00000565393 SLC52A2Q9HAB3 445 aa8.63□□□□□ -1.03
TCF4-228ENST00000565393 PARP3Q9Y6F1 533 aa8.63□□□□□ -1.03
TCF4-228ENST00000565393 KAT6BQ8WYB5 2073 aa8.63□□□□□ -1.03
TCF4-228ENST00000565393 ADRA2BP18089 450 aa8.62□□□□□ -1.03
TCF4-228ENST00000565393 CRKLP46109 303 aaKnown RBP8.62□□□□□ -1.03
TCF4-228ENST00000565393 SLC39A6Q13433 755 aa8.62□□□□□ -1.03
TCF4-228ENST00000565393 NUDCQ9Y266 331 aa8.62□□□□□ -1.03
TCF4-228ENST00000565393 PLEKHG2Q9H7P9 1386 aa8.61□□□□□ -1.03
TCF4-228ENST00000565393 A0A0G2JLW4 131 aa8.61□□□□□ -1.03
TCF4-228ENST00000565393 GYS1P13807 737 aa8.61□□□□□ -1.03
TCF4-228ENST00000565393 DNAJC10Q8IXB1 793 aa8.61□□□□□ -1.03
TCF4-228ENST00000565393 CNTNAP4Q9C0A0 1308 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 MAP2P11137 1827 aaKnown RBP8.6□□□□□ -1.03
TCF4-228ENST00000565393 GNAT3A8MTJ3 354 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 ZPR1O75312 459 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 TGFB2P61812 414 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 TEFQ10587 303 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 INTS5Q6P9B9 1019 aaKnown RBP8.6□□□□□ -1.03
TCF4-228ENST00000565393 TTC5Q8N0Z6 440 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 CCDC87Q9NVE4 849 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 SRP68Q9UHB9 627 aaKnown RBP8.6□□□□□ -1.03
TCF4-228ENST00000565393 KDM6AO15550 1401 aaPredicted RBP8.6□□□□□ -1.03
TCF4-228ENST00000565393 SHANK3Q9BYB0 1731 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 KDRP35968 1356 aa8.6□□□□□ -1.03
TCF4-228ENST00000565393 U2AF1L5P0DN76 240 aaPredicted RBP8.59□□□□□ -1.03
TCF4-228ENST00000565393 CYP19A1P11511 503 aaPredicted RBP8.59□□□□□ -1.03
TCF4-228ENST00000565393 CANXP27824 592 aaKnown RBP8.59□□□□□ -1.03
TCF4-228ENST00000565393 U2AF1Q01081 240 aaKnown RBP eCLIP8.59□□□□□ -1.03
TCF4-228ENST00000565393 IL17REQ8NFR9 667 aa8.59□□□□□ -1.03
TCF4-228ENST00000565393 GAS2L2Q8NHY3 880 aa8.59□□□□□ -1.03
TCF4-228ENST00000565393 BCS1LQ9Y276 419 aa8.59□□□□□ -1.03
TCF4-228ENST00000565393 LY75O60449 1722 aa8.59□□□□□ -1.03
TCF4-228ENST00000565393 SRCAPQ6ZRS2 3230 aa8.59□□□□□ -1.03
TCF4-228ENST00000565393 GIGYF1O75420 1035 aaPredicted RBP8.58□□□□□ -1.04
TCF4-228ENST00000565393 STARD3NLO95772 234 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 PRKAR2BP31323 418 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 C1QTNF8P60827 252 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 FKBP8Q14318 412 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 USPL1Q5W0Q7 1092 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 ARHGAP27Q6ZUM4 889 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 ZNF526Q8TF50 670 aaPredicted RBP8.58□□□□□ -1.04
TCF4-228ENST00000565393 PHACTR3Q96KR7 559 aa8.58□□□□□ -1.04
TCF4-228ENST00000565393 C4BP0C0L5 1744 aa8.57□□□□□ -1.04
TCF4-228ENST00000565393 PKD1L3Q7Z443 1732 aa8.57□□□□□ -1.04
TCF4-228ENST00000565393 FCHSD2O94868 740 aa8.57□□□□□ -1.04
TCF4-228ENST00000565393 DPEP1P16444 411 aa8.57□□□□□ -1.04
TCF4-228ENST00000565393 PPP2R1AP30153 589 aa8.57□□□□□ -1.04
TCF4-228ENST00000565393 NPM2Q86SE8 214 aaKnown RBP8.57□□□□□ -1.04
TCF4-228ENST00000565393 RTF1Q92541 710 aaKnown RBP8.57□□□□□ -1.04
TCF4-228ENST00000565393 ZNF330Q9Y3S2 320 aaPredicted RBP8.57□□□□□ -1.04
TCF4-228ENST00000565393 NPC1L1Q9UHC9 1359 aa8.57□□□□□ -1.04
TCF4-228ENST00000565393 SENP3-EIF4A1A0A087X0R7 540 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 BTBD11A6QL63 1104 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 NEFMP07197 916 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 TM4SF1P30408 202 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 ZNF790Q6PG37 636 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 BICDL1Q6ZP65 573 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 VSIG10Q8N0Z9 540 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 TEX13AQ9BXU3 409 aaPredicted RBP8.56□□□□□ -1.04
TCF4-228ENST00000565393 GPBP1L1Q9HC44 474 aaPredicted RBP8.56□□□□□ -1.04
TCF4-228ENST00000565393 PIM2Q9P1W9 311 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 C5P01031 1676 aa8.56□□□□□ -1.04
TCF4-228ENST00000565393 USP42Q9H9J4 1324 aaKnown RBP8.55□□□□□ -1.04
TCF4-228ENST00000565393 ANKRD26Q9UPS8 1709 aa8.55□□□□□ -1.04
TCF4-228ENST00000565393 TOGARAM1Q9Y4F4 1720 aa8.55□□□□□ -1.04
TCF4-228ENST00000565393 A0A087WZG4 1122 aa8.55□□□□□ -1.04
TCF4-228ENST00000565393 ZNF496Q96IT1 587 aaPredicted RBP8.55□□□□□ -1.04
TCF4-228ENST00000565393 NARFQ9UHQ1 456 aa8.55□□□□□ -1.04
TCF4-228ENST00000565393 ZBTB1Q9Y2K1 713 aa8.55□□□□□ -1.04
TCF4-228ENST00000565393 A1BGP04217 495 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 SERPINB2P05120 415 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 CHRNA5P30532 468 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 DDR1Q08345 913 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 DALRD3Q5D0E6 543 aaKnown RBP8.54□□□□□ -1.04
TCF4-228ENST00000565393 MCM10Q7L590 875 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 FMNL2Q96PY5 1086 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 RSPH6AQ9H0K4 717 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 TBC1D2BQ9UPU7 963 aa8.54□□□□□ -1.04
TCF4-228ENST00000565393 SOS1Q07889 1333 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms