RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 ITPRIPQ8IWB1 547 aa23■■□□□ 1.27
COMMD4-208ENST00000563220 DCAF5Q96JK2 942 aa23■■□□□ 1.27
COMMD4-208ENST00000563220 SOS1Q07889 1333 aaPredicted RBP23■■□□□ 1.27
COMMD4-208ENST00000563220 NUTM2BA6NNL0 878 aaPredicted RBP23■■□□□ 1.27
COMMD4-208ENST00000563220 NUTM2EB1AL46 878 aaPredicted RBP23■■□□□ 1.27
COMMD4-208ENST00000563220 AAMPQ13685 434 aa23■■□□□ 1.27
COMMD4-208ENST00000563220 NUTM2AQ8IVF1 878 aaPredicted RBP23■■□□□ 1.27
COMMD4-208ENST00000563220 SLC52A2Q9HAB3 445 aa23■■□□□ 1.27
COMMD4-208ENST00000563220 PKD1L3Q7Z443 1732 aa22.99■■□□□ 1.27
COMMD4-208ENST00000563220 KDM2BQ8NHM5 1336 aa22.99■■□□□ 1.27
COMMD4-208ENST00000563220 API5Q9BZZ5 524 aaKnown RBP22.98■■□□□ 1.27
COMMD4-208ENST00000563220 HSP90AB1P08238 724 aaKnown RBP22.98■■□□□ 1.27
COMMD4-208ENST00000563220 NFATC2IPQ8NCF5 419 aa22.98■■□□□ 1.27
COMMD4-208ENST00000563220 NECTIN2Q92692 538 aa22.98■■□□□ 1.27
COMMD4-208ENST00000563220 DDX19BQ9UMR2 479 aa22.98■■□□□ 1.27
COMMD4-208ENST00000563220 ABCC4O15439 1325 aa22.97■■□□□ 1.27
COMMD4-208ENST00000563220 CCDC30Q5VVM6 783 aa22.97■■□□□ 1.27
COMMD4-208ENST00000563220 PCDHB15Q9Y5E8 787 aa22.97■■□□□ 1.27
COMMD4-208ENST00000563220 PCDH11XQ9BZA7 1347 aa22.97■■□□□ 1.27
COMMD4-208ENST00000563220 PCDH11YQ9BZA8 1340 aa22.97■■□□□ 1.27
COMMD4-208ENST00000563220 G2E3Q7L622 706 aa22.96■■□□□ 1.27
COMMD4-208ENST00000563220 KDM3BQ7LBC6 1761 aa22.96■■□□□ 1.27
COMMD4-208ENST00000563220 IGHDP01880 384 aa22.95■■□□□ 1.26
COMMD4-208ENST00000563220 PARP4Q9UKK3 1724 aaKnown RBP22.94■■□□□ 1.26
COMMD4-208ENST00000563220 STK31Q9BXU1 1019 aa22.94■■□□□ 1.26
COMMD4-208ENST00000563220 PTPRCP08575 1304 aa22.94■■□□□ 1.26
COMMD4-208ENST00000563220 HOXB7P09629 217 aa22.94■■□□□ 1.26
COMMD4-208ENST00000563220 SLC39A6Q13433 755 aa22.94■■□□□ 1.26
COMMD4-208ENST00000563220 NKX1-1Q15270 411 aaPredicted RBP22.94■■□□□ 1.26
COMMD4-208ENST00000563220 HDGFL1Q5TGJ6 251 aa22.94■■□□□ 1.26
COMMD4-208ENST00000563220 CENPQQ7L2Z9 268 aaPredicted RBP22.94■■□□□ 1.26
COMMD4-208ENST00000563220 DDX54Q8TDD1 881 aaKnown RBP22.94■■□□□ 1.26
COMMD4-208ENST00000563220 VIRMAQ69YN4 1812 aaKnown RBP22.94■■□□□ 1.26
COMMD4-208ENST00000563220 HEG1Q9ULI3 1381 aa22.93■■□□□ 1.26
COMMD4-208ENST00000563220 RGS12O14924 1447 aa22.93■■□□□ 1.26
COMMD4-208ENST00000563220 SCN11AQ9UI33 1791 aa22.93■■□□□ 1.26
COMMD4-208ENST00000563220 SIPA1L3O60292 1781 aaPredicted RBP22.92■■□□□ 1.26
COMMD4-208ENST00000563220 EIF2S2P20042 333 aaKnown RBP22.92■■□□□ 1.26
COMMD4-208ENST00000563220 MYT1Q01538 1121 aa22.92■■□□□ 1.26
COMMD4-208ENST00000563220 ZNF790Q6PG37 636 aa22.92■■□□□ 1.26
COMMD4-208ENST00000563220 ZBTB40Q9NUA8 1239 aa22.92■■□□□ 1.26
COMMD4-208ENST00000563220 GIGYF1O75420 1035 aaPredicted RBP22.92■■□□□ 1.26
COMMD4-208ENST00000563220 ZBTB7BO15156 539 aaPredicted RBP22.91■■□□□ 1.26
COMMD4-208ENST00000563220 CABP4P57796 275 aa22.91■■□□□ 1.26
COMMD4-208ENST00000563220 JCADQ9P266 1359 aa22.9■■□□□ 1.26
COMMD4-208ENST00000563220 DISP2A7MBM2 1401 aa22.9■■□□□ 1.26
COMMD4-208ENST00000563220 MRC1P22897 1456 aa22.9■■□□□ 1.26
COMMD4-208ENST00000563220 PRAMEF22A3QJZ6 481 aa22.9■■□□□ 1.26
COMMD4-208ENST00000563220 FLIIQ13045 1269 aa22.89■■□□□ 1.25
COMMD4-208ENST00000563220 INTS3Q68E01 1043 aaKnown RBP22.89■■□□□ 1.25
COMMD4-208ENST00000563220 ERVV-2B6SEH9 535 aa22.88■■□□□ 1.25
COMMD4-208ENST00000563220 SKAP1Q86WV1 359 aa22.87■■□□□ 1.25
COMMD4-208ENST00000563220 PLCH1Q4KWH8 1693 aa22.86■■□□□ 1.25
COMMD4-208ENST00000563220 SPATA31A1Q5TZJ5 1347 aa22.86■■□□□ 1.25
COMMD4-208ENST00000563220 F6X3S4 739 aa22.86■■□□□ 1.25
COMMD4-208ENST00000563220 CHPF2Q9P2E5 772 aa22.86■■□□□ 1.25
COMMD4-208ENST00000563220 ZNF496Q96IT1 587 aaPredicted RBP22.85■■□□□ 1.25
COMMD4-208ENST00000563220 CHMP4AQ9BY43 222 aa22.85■■□□□ 1.25
COMMD4-208ENST00000563220 PHAXQ9H814 394 aaKnown RBP22.85■■□□□ 1.25
COMMD4-208ENST00000563220 SLIT2O94813 1529 aa22.85■■□□□ 1.25
COMMD4-208ENST00000563220 SHANK3Q9BYB0 1731 aa22.85■■□□□ 1.25
COMMD4-208ENST00000563220 FKBP5Q13451 457 aaPredicted RBP22.84■■□□□ 1.25
COMMD4-208ENST00000563220 TTC5Q8N0Z6 440 aa22.83■■□□□ 1.25
COMMD4-208ENST00000563220 CHMP4BQ9H444 224 aaKnown RBP22.83■■□□□ 1.25
COMMD4-208ENST00000563220 RWDD1Q9H446 243 aaPredicted RBP22.83■■□□□ 1.25
COMMD4-208ENST00000563220 ANXA1P04083 346 aa22.83■■□□□ 1.24
COMMD4-208ENST00000563220 NRAPQ86VF7 1730 aa22.82■■□□□ 1.24
COMMD4-208ENST00000563220 EXOC5O00471 708 aa22.82■■□□□ 1.24
COMMD4-208ENST00000563220 THRAP3Q9Y2W1 955 aaKnown RBP22.82■■□□□ 1.24
COMMD4-208ENST00000563220 SPATA31A5Q5VU36 1347 aa22.82■■□□□ 1.24
COMMD4-208ENST00000563220 SPATA31A7Q8IWB4 1347 aa22.82■■□□□ 1.24
COMMD4-208ENST00000563220 SLC4A10Q6U841 1118 aa22.81■■□□□ 1.24
COMMD4-208ENST00000563220 C8orf37Q96NL8 207 aa22.81■■□□□ 1.24
COMMD4-208ENST00000563220 HSPA1LP34931 641 aa22.81■■□□□ 1.24
COMMD4-208ENST00000563220 DBF4Q9UBU7 674 aaPredicted RBP22.81■■□□□ 1.24
COMMD4-208ENST00000563220 PROSER3Q2NL68 480 aa22.8■■□□□ 1.24
COMMD4-208ENST00000563220 UNC5CLQ8IV45 518 aa22.8■■□□□ 1.24
COMMD4-208ENST00000563220 NGLY1Q96IV0 654 aa22.8■■□□□ 1.24
COMMD4-208ENST00000563220 FMNL2Q96PY5 1086 aa22.8■■□□□ 1.24
COMMD4-208ENST00000563220 C1orf115Q9H7X2 142 aa22.8■■□□□ 1.24
COMMD4-208ENST00000563220 HDAC1Q13547 482 aaPredicted RBP22.79■■□□□ 1.24
COMMD4-208ENST00000563220 SPATA31A6Q5VVP1 1343 aa22.79■■□□□ 1.24
COMMD4-208ENST00000563220 SNRPA1P09661 255 aaKnown RBP22.79■■□□□ 1.24
COMMD4-208ENST00000563220 CDCA7Q9BWT1 371 aaPredicted RBP22.79■■□□□ 1.24
COMMD4-208ENST00000563220 CCT4P50991 539 aaKnown RBP22.78■■□□□ 1.24
COMMD4-208ENST00000563220 PDIA6Q15084 440 aa22.78■■□□□ 1.24
COMMD4-208ENST00000563220 CCDC9Q9Y3X0 531 aaKnown RBP22.78■■□□□ 1.24
COMMD4-208ENST00000563220 USP16Q9Y5T5 823 aa22.78■■□□□ 1.24
COMMD4-208ENST00000563220 FNBP4Q8N3X1 1017 aaPredicted RBP22.76■■□□□ 1.23
COMMD4-208ENST00000563220 MEIS3Q99687 375 aa22.76■■□□□ 1.23
COMMD4-208ENST00000563220 BCL9LQ86UU0 1499 aa22.76■■□□□ 1.23
COMMD4-208ENST00000563220 NWD2Q9ULI1 1742 aa22.76■■□□□ 1.23
COMMD4-208ENST00000563220 CACNA1FO60840 1977 aa22.76■■□□□ 1.23
COMMD4-208ENST00000563220 LRP6O75581 1613 aa22.76■■□□□ 1.23
COMMD4-208ENST00000563220 BARGINQ6ZT62 677 aa22.75■■□□□ 1.23
COMMD4-208ENST00000563220 DDX21Q9NR30 783 aaKnown RBP eCLIP22.75■■□□□ 1.23
COMMD4-208ENST00000563220 TMOD3Q9NYL9 352 aa22.75■■□□□ 1.23
COMMD4-208ENST00000563220 PIGBQ92521 554 aa22.75■■□□□ 1.23
COMMD4-208ENST00000563220 TNS2Q63HR2 1409 aa22.74■■□□□ 1.23
COMMD4-208ENST00000563220 DDB1Q16531 1140 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms