RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 BRD4O60885 1362 aaPredicted RBP10.68□□□□□ -0.7
SPG11-205ENST00000558080 COL18A1P39060 1754 aa10.68□□□□□ -0.7
SPG11-205ENST00000558080 RGPD1P0DJD0 1748 aa10.68□□□□□ -0.7
SPG11-205ENST00000558080 FAM182BQ5T319 152 aa10.68□□□□□ -0.7
SPG11-205ENST00000558080 MRPL50Q8N5N7 158 aaKnown RBP10.68□□□□□ -0.7
SPG11-205ENST00000558080 EMILIN3Q9NT22 766 aa10.68□□□□□ -0.7
SPG11-205ENST00000558080 USP35Q9P2H5 1018 aa10.68□□□□□ -0.7
SPG11-205ENST00000558080 SPATA31A1Q5TZJ5 1347 aa10.67□□□□□ -0.7
SPG11-205ENST00000558080 NBPF3Q9H094 633 aa10.67□□□□□ -0.7
SPG11-205ENST00000558080 BLMP54132 1417 aaPredicted RBP10.67□□□□□ -0.7
SPG11-205ENST00000558080 SSH2Q76I76 1423 aa10.67□□□□□ -0.7
SPG11-205ENST00000558080 CPDO75976 1380 aa10.66□□□□□ -0.7
SPG11-205ENST00000558080 KTN1Q86UP2 1357 aaKnown RBP10.66□□□□□ -0.7
SPG11-205ENST00000558080 TTC21BQ7Z4L5 1316 aa10.66□□□□□ -0.7
SPG11-205ENST00000558080 SF3B2Q13435 895 aaKnown RBP10.66□□□□□ -0.7
SPG11-205ENST00000558080 LARP1Q6PKG0 1096 aaKnown RBP10.66□□□□□ -0.7
SPG11-205ENST00000558080 DEFB132Q7Z7B7 95 aa10.66□□□□□ -0.7
SPG11-205ENST00000558080 WNT2BQ93097 391 aa10.66□□□□□ -0.7
SPG11-205ENST00000558080 SLIT3O75094 1523 aa10.66□□□□□ -0.7
SPG11-205ENST00000558080 LTN1O94822 1766 aa10.66□□□□□ -0.7
SPG11-205ENST00000558080 WNK3Q9BYP7 1800 aa10.65□□□□□ -0.7
SPG11-205ENST00000558080 GOLGA8CPA6NN73 597 aa10.65□□□□□ -0.7
SPG11-205ENST00000558080 TMC1Q8TDI8 760 aa10.65□□□□□ -0.7
SPG11-205ENST00000558080 PCDHGA10Q9Y5H3 936 aa10.65□□□□□ -0.7
SPG11-205ENST00000558080 CPSF1Q10570 1443 aaKnown RBP10.65□□□□□ -0.7
SPG11-205ENST00000558080 SBNO2Q9Y2G9 1366 aa10.65□□□□□ -0.71
SPG11-205ENST00000558080 TNS1Q9HBL0 1735 aaKnown RBP10.64□□□□□ -0.71
SPG11-205ENST00000558080 SBF2Q86WG5 1849 aa10.64□□□□□ -0.71
SPG11-205ENST00000558080 PPP1R3GB7ZBB8 358 aa10.64□□□□□ -0.71
SPG11-205ENST00000558080 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.64□□□□□ -0.71
SPG11-205ENST00000558080 TTC21AQ8NDW8 1320 aa10.63□□□□□ -0.71
SPG11-205ENST00000558080 ST20-MTHFSA0A0A6YYL1 179 aa10.63□□□□□ -0.71
SPG11-205ENST00000558080 SLC12A5Q9H2X9 1139 aa10.63□□□□□ -0.71
SPG11-205ENST00000558080 PARP4Q9UKK3 1724 aaKnown RBP10.63□□□□□ -0.71
SPG11-205ENST00000558080 USP54Q70EL1 1684 aa10.63□□□□□ -0.71
SPG11-205ENST00000558080 COL5A2P05997 1499 aaPredicted RBP10.62□□□□□ -0.71
SPG11-205ENST00000558080 RGS20O76081 388 aa10.62□□□□□ -0.71
SPG11-205ENST00000558080 TCP11L2Q8N4U5 519 aa10.62□□□□□ -0.71
SPG11-205ENST00000558080 AATKQ6ZMQ8 1374 aa10.62□□□□□ -0.71
SPG11-205ENST00000558080 CD163L1Q9NR16 1453 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 PDE3BQ13370 1112 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 BARGINQ6ZT62 677 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 HDGFL2Q7Z4V5 671 aaPredicted RBP10.61□□□□□ -0.71
SPG11-205ENST00000558080 NME9Q86XW9 330 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 KCNH5Q8NCM2 988 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 FBXW7Q969H0 707 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 RABGEF1Q9UJ41 708 aa10.61□□□□□ -0.71
SPG11-205ENST00000558080 CRB1P82279 1406 aa10.6□□□□□ -0.71
SPG11-205ENST00000558080 NFAT5O94916 1531 aa10.6□□□□□ -0.71
SPG11-205ENST00000558080 PHF14O94880 888 aa10.6□□□□□ -0.71
SPG11-205ENST00000558080 BAG6P46379 1132 aa10.6□□□□□ -0.71
SPG11-205ENST00000558080 ARHGEF25Q86VW2 580 aa10.6□□□□□ -0.71
SPG11-205ENST00000558080 TESK2Q96S53 571 aa10.6□□□□□ -0.71
SPG11-205ENST00000558080 TRIM37O94972 964 aa10.59□□□□□ -0.71
SPG11-205ENST00000558080 EN1Q05925 392 aaPredicted RBP10.59□□□□□ -0.71
SPG11-205ENST00000558080 TYW1BQ6NUM6 668 aa10.59□□□□□ -0.71
SPG11-205ENST00000558080 FAM196AQ6ZSG2 479 aa10.59□□□□□ -0.71
SPG11-205ENST00000558080 TOM1L2Q6ZVM7 507 aa10.59□□□□□ -0.71
SPG11-205ENST00000558080 TERF2IPQ9NYB0 399 aa10.59□□□□□ -0.71
SPG11-205ENST00000558080 THRAP3Q9Y2W1 955 aaKnown RBP10.59□□□□□ -0.71
SPG11-205ENST00000558080 RGPD2P0DJD1 1756 aa10.59□□□□□ -0.71
SPG11-205ENST00000558080 LRRC37A3O60309 1634 aa10.58□□□□□ -0.72
SPG11-205ENST00000558080 A0A1W2PP64 1363 aa10.58□□□□□ -0.72
SPG11-205ENST00000558080 CSB-PGBD3P0DP91 1061 aa10.58□□□□□ -0.72
SPG11-205ENST00000558080 COL9A1P20849 921 aa10.58□□□□□ -0.72
SPG11-205ENST00000558080 PUS7Q96PZ0 661 aaKnown RBP10.58□□□□□ -0.72
SPG11-205ENST00000558080 EDC4Q6P2E9 1401 aaKnown RBP10.58□□□□□ -0.72
SPG11-205ENST00000558080 WDR17Q8IZU2 1322 aa10.58□□□□□ -0.72
SPG11-205ENST00000558080 USP31Q70CQ4 1352 aa10.57□□□□□ -0.72
SPG11-205ENST00000558080 USP47Q96K76 1375 aa10.57□□□□□ -0.72
SPG11-205ENST00000558080 KIF20BQ96Q89 1820 aa10.57□□□□□ -0.72
SPG11-205ENST00000558080 CAMK2BQ13554 666 aa10.57□□□□□ -0.72
SPG11-205ENST00000558080 PROX2Q3B8N5 592 aa10.57□□□□□ -0.72
SPG11-205ENST00000558080 PEAK1Q9H792 1746 aa10.57□□□□□ -0.72
SPG11-205ENST00000558080 APBA3O96018 575 aa10.56□□□□□ -0.72
SPG11-205ENST00000558080 EZH2Q15910 746 aaKnown RBP10.56□□□□□ -0.72
SPG11-205ENST00000558080 RREB1Q92766 1687 aa10.55□□□□□ -0.72
SPG11-205ENST00000558080 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
SPG11-205ENST00000558080 ZEB1P37275 1124 aaPredicted RBP10.55□□□□□ -0.72
SPG11-205ENST00000558080 TMF1P82094 1093 aa10.55□□□□□ -0.72
SPG11-205ENST00000558080 ANKK1Q8NFD2 765 aa10.55□□□□□ -0.72
SPG11-205ENST00000558080 CARD10Q9BWT7 1032 aa10.55□□□□□ -0.72
SPG11-205ENST00000558080 NUP188Q5SRE5 1749 aa10.55□□□□□ -0.72
SPG11-205ENST00000558080 ABCC6O95255 1503 aa10.54□□□□□ -0.72
SPG11-205ENST00000558080 MYOM1P52179 1685 aa10.54□□□□□ -0.72
SPG11-205ENST00000558080 DDB1Q16531 1140 aa10.54□□□□□ -0.72
SPG11-205ENST00000558080 LAPTM4BQ86VI4 370 aa10.54□□□□□ -0.72
SPG11-205ENST00000558080 MAP2P11137 1827 aaKnown RBP10.54□□□□□ -0.72
SPG11-205ENST00000558080 NINLQ9Y2I6 1382 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 OVOS2A0A0J9YW53 1432 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 DISP2A7MBM2 1401 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 OVOS2Q6IE36 1432 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 CAMKK2Q96RR4 588 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 EPAS1Q99814 870 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 NLRP2Q9NX02 1062 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 TIMELESSQ9UNS1 1208 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 FAM208AQ9UK61 1670 aaKnown RBP10.53□□□□□ -0.72
SPG11-205ENST00000558080 CLSPNQ9HAW4 1339 aa10.53□□□□□ -0.72
SPG11-205ENST00000558080 OVOS2A0A0G2JMS6 1433 aa10.52□□□□□ -0.73
SPG11-205ENST00000558080 FBLN1P23142 703 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms