RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 TSPAN18Q96SJ8 248 aa7.81□□□□□ -1.16
TDP1-215ENST00000556498 PPP1R15AO75807 674 aaPredicted RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 RFX1P22670 979 aa7.8□□□□□ -1.16
TDP1-215ENST00000556498 LMOD1P29536 600 aaPredicted RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 SRPK2P78362 688 aaKnown RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 RC3H1Q5TC82 1133 aaKnown RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 FOXD4L5Q5VV16 416 aaPredicted RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 SDR16C5Q8N3Y7 309 aa7.8□□□□□ -1.16
TDP1-215ENST00000556498 FAM174AQ8TBP5 190 aa7.8□□□□□ -1.16
TDP1-215ENST00000556498 FOXD4L4Q8WXT5 416 aaPredicted RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 CHIC2Q9UKJ5 165 aa7.8□□□□□ -1.16
TDP1-215ENST00000556498 MAFBQ9Y5Q3 323 aaPredicted RBP7.8□□□□□ -1.16
TDP1-215ENST00000556498 A0A0G2JS52 829 aa7.79□□□□□ -1.16
TDP1-215ENST00000556498 NOL8Q76FK4 1167 aaKnown RBP7.79□□□□□ -1.16
TDP1-215ENST00000556498 SLC10A4Q96EP9 437 aa7.79□□□□□ -1.16
TDP1-215ENST00000556498 IPO9Q96P70 1041 aaKnown RBP7.79□□□□□ -1.16
TDP1-215ENST00000556498 CDV3Q9UKY7 258 aaKnown RBP7.79□□□□□ -1.16
TDP1-215ENST00000556498 GIGYF1O75420 1035 aaPredicted RBP7.78□□□□□ -1.16
TDP1-215ENST00000556498 SKIP12755 728 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 GORABQ5T7V8 394 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 RNF135Q8IUD6 432 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 ANKRD13AQ8IZ07 590 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 EHBP1Q8NDI1 1231 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 PBXIP1Q96AQ6 731 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 CADPSQ9ULU8 1353 aa7.78□□□□□ -1.16
TDP1-215ENST00000556498 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.77□□□□□ -1.17
TDP1-215ENST00000556498 ESPNB1AK53 854 aa7.77□□□□□ -1.17
TDP1-215ENST00000556498 MFAP1P55081 439 aaKnown RBP7.77□□□□□ -1.17
TDP1-215ENST00000556498 LMOD3Q0VAK6 560 aa7.77□□□□□ -1.17
TDP1-215ENST00000556498 TSGA10IPQ3SY00 556 aa7.77□□□□□ -1.17
TDP1-215ENST00000556498 SPRYD7Q5W111 196 aa7.77□□□□□ -1.17
TDP1-215ENST00000556498 MSL3Q8N5Y2 521 aaKnown RBP7.77□□□□□ -1.17
TDP1-215ENST00000556498 SGSM3Q96HU1 749 aa7.77□□□□□ -1.17
TDP1-215ENST00000556498 PAIP2Q9BPZ3 127 aaKnown RBP7.77□□□□□ -1.17
TDP1-215ENST00000556498 USP17L5A8MUK1 530 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 SIAH2O43255 324 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 MTA1Q13330 715 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 MAP7D1Q3KQU3 841 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 RNF20Q5VTR2 975 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 PLEKHM2Q8IWE5 1019 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 MPNDQ8N594 471 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 PLPP7Q8NBV4 271 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 CDK15Q96Q40 435 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 EFCC1Q9HA90 598 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 MAP4K5Q9Y4K4 846 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 MRVI1Q9Y6F6 885 aa7.76□□□□□ -1.17
TDP1-215ENST00000556498 ABCC9O60706 1549 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 USP17L3A6NCW0 530 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 USP17L4A6NCW7 530 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 WNT7AO00755 349 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 LZTS3O60299 673 aaPredicted RBP7.75□□□□□ -1.17
TDP1-215ENST00000556498 ZNF500O60304 480 aaPredicted RBP7.75□□□□□ -1.17
TDP1-215ENST00000556498 ZRANB2O95218 330 aaKnown RBP eCLIP7.75□□□□□ -1.17
TDP1-215ENST00000556498 L1TD1Q5T7N2 865 aaKnown RBP7.75□□□□□ -1.17
TDP1-215ENST00000556498 KANK4Q5T7N3 995 aaPredicted RBP7.75□□□□□ -1.17
TDP1-215ENST00000556498 TRAF7Q6Q0C0 670 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 USP17L2Q6R6M4 530 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 USP17L1Q7RTZ2 530 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 ANKRD23Q86SG2 305 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 SEPT12Q8IYM1 358 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 FAM210AQ96ND0 272 aa7.75□□□□□ -1.17
TDP1-215ENST00000556498 KCTD15Q96SI1 283 aaPredicted RBP7.75□□□□□ -1.17
TDP1-215ENST00000556498 HIRIP3Q9BW71 556 aaPredicted RBP7.75□□□□□ -1.17
TDP1-215ENST00000556498 VGLL3A8MV65 326 aa7.74□□□□□ -1.17
TDP1-215ENST00000556498 VASH1Q7L8A9 365 aaPredicted RBP7.74□□□□□ -1.17
TDP1-215ENST00000556498 ZNF598Q86UK7 904 aaKnown RBP7.74□□□□□ -1.17
TDP1-215ENST00000556498 DEPDC4Q8N2C3 294 aa7.74□□□□□ -1.17
TDP1-215ENST00000556498 CCDC85AQ96PX6 553 aaPredicted RBP7.74□□□□□ -1.17
TDP1-215ENST00000556498 VRTNQ9H8Y1 702 aa7.74□□□□□ -1.17
TDP1-215ENST00000556498 V9GY48 417 aaPredicted RBP7.74□□□□□ -1.17
TDP1-215ENST00000556498 NEFHP12036 1026 aa7.73□□□□□ -1.17
TDP1-215ENST00000556498 LIG1P18858 919 aa7.73□□□□□ -1.17
TDP1-215ENST00000556498 GRM5P41594 1212 aa7.73□□□□□ -1.17
TDP1-215ENST00000556498 WDR78Q5VTH9 848 aa7.73□□□□□ -1.17
TDP1-215ENST00000556498 SNRNP27Q8WVK2 155 aaKnown RBP7.73□□□□□ -1.17
TDP1-215ENST00000556498 MRGPRX2Q96LB1 330 aa7.73□□□□□ -1.17
TDP1-215ENST00000556498 PRKD2Q9BZL6 878 aa7.73□□□□□ -1.17
TDP1-215ENST00000556498 NCOA4Q13772 614 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 ARID5BQ14865 1188 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 CDCA8Q53HL2 280 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 ZNF697Q5TEC3 545 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 MTA3Q9BTC8 594 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 TRAIPQ9BWF2 469 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 MKRN1Q9UHC7 482 aaKnown RBP7.72□□□□□ -1.17
TDP1-215ENST00000556498 DOLKQ9UPQ8 538 aa7.72□□□□□ -1.17
TDP1-215ENST00000556498 TPD52L2O43399 206 aaKnown RBP7.71□□□□□ -1.18
TDP1-215ENST00000556498 ATG7O95352 703 aa7.71□□□□□ -1.18
TDP1-215ENST00000556498 FOXD4L6Q3SYB3 417 aaPredicted RBP7.71□□□□□ -1.18
TDP1-215ENST00000556498 INTS6LQ5JSJ4 861 aaKnown RBP7.71□□□□□ -1.18
TDP1-215ENST00000556498 FOXD4L3Q6VB84 417 aaPredicted RBP7.71□□□□□ -1.18
TDP1-215ENST00000556498 ARMCX6Q7L4S7 300 aa7.71□□□□□ -1.18
TDP1-215ENST00000556498 NME8Q8N427 588 aa7.71□□□□□ -1.18
TDP1-215ENST00000556498 CDCA7Q9BWT1 371 aaPredicted RBP7.71□□□□□ -1.18
TDP1-215ENST00000556498 PKD2L1Q9P0L9 805 aa7.71□□□□□ -1.18
TDP1-215ENST00000556498 CEP83Q9Y592 693 aa7.71□□□□□ -1.18
TDP1-215ENST00000556498 ZRSR2Q15696 482 aaKnown RBP7.7□□□□□ -1.18
TDP1-215ENST00000556498 EML3Q32P44 896 aa7.7□□□□□ -1.18
TDP1-215ENST00000556498 CTR9Q6PD62 1173 aa7.7□□□□□ -1.18
TDP1-215ENST00000556498 RETREG2Q8NC44 543 aa7.7□□□□□ -1.18
TDP1-215ENST00000556498 CXorf38Q8TB03 319 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms