RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 AEBP2Q6ZN18 517 aaPredicted RBP19.49■□□□□ 0.71
TDP1-215ENST00000556498 CHIC1Q5VXU3 224 aa19.3■□□□□ 0.68
TDP1-215ENST00000556498 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
TDP1-215ENST00000556498 SENP3Q9H4L4 574 aaPredicted RBP16.48■□□□□ 0.23
TDP1-215ENST00000556498 PLPPR3Q6T4P5 718 aa15.79■□□□□ 0.12
TDP1-215ENST00000556498 FOXD1Q16676 465 aa15.27■□□□□ 0.04
TDP1-215ENST00000556498 PPP6R1Q9UPN7 881 aa14.93□□□□□ -0.02
TDP1-215ENST00000556498 ADRA2BP18089 450 aa14.91□□□□□ -0.02
TDP1-215ENST00000556498 PIAS4Q8N2W9 510 aaPredicted RBP14.44□□□□□ -0.1
TDP1-215ENST00000556498 MSH5O43196 834 aa13.96□□□□□ -0.17
TDP1-215ENST00000556498 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
TDP1-215ENST00000556498 KCNA4P22459 653 aa13.94□□□□□ -0.18
TDP1-215ENST00000556498 NCBP3Q53F19 620 aaKnown RBP13.66□□□□□ -0.22
TDP1-215ENST00000556498 SCAF1Q9H7N4 1312 aaKnown RBP13.64□□□□□ -0.23
TDP1-215ENST00000556498 CNKSR2Q8WXI2 1034 aa13.5□□□□□ -0.25
TDP1-215ENST00000556498 NPM3O75607 178 aaKnown RBP13.46□□□□□ -0.25
TDP1-215ENST00000556498 MAPK8IP2Q13387 824 aaPredicted RBP13.46□□□□□ -0.25
TDP1-215ENST00000556498 SLC4A1APQ9BWU0 796 aaKnown RBP13.31□□□□□ -0.28
TDP1-215ENST00000556498 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
TDP1-215ENST00000556498 DMRT2Q9Y5R5 561 aa13.2□□□□□ -0.3
TDP1-215ENST00000556498 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
TDP1-215ENST00000556498 DNAJC5BQ9UF47 199 aa13.07□□□□□ -0.32
TDP1-215ENST00000556498 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
TDP1-215ENST00000556498 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
TDP1-215ENST00000556498 ZBTB22O15209 634 aa12.84□□□□□ -0.35
TDP1-215ENST00000556498 FOXD4L1Q9NU39 408 aa12.73□□□□□ -0.37
TDP1-215ENST00000556498 SLC4A2P04920 1241 aa12.66□□□□□ -0.38
TDP1-215ENST00000556498 DCAF8L1A6NGE4 600 aa12.58□□□□□ -0.4
TDP1-215ENST00000556498 MYCNP04198 464 aaPredicted RBP12.42□□□□□ -0.42
TDP1-215ENST00000556498 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.41□□□□□ -0.42
TDP1-215ENST00000556498 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
TDP1-215ENST00000556498 U3KPZ7 1027 aaPredicted RBP12.25□□□□□ -0.45
TDP1-215ENST00000556498 POTEDQ86YR6 584 aa12.23□□□□□ -0.45
TDP1-215ENST00000556498 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.19□□□□□ -0.46
TDP1-215ENST00000556498 HNRNPUL2Q1KMD3 747 aaKnown RBP12.19□□□□□ -0.46
TDP1-215ENST00000556498 SAMD1Q6SPF0 538 aaPredicted RBP12.16□□□□□ -0.46
TDP1-215ENST00000556498 ATF5Q9Y2D1 282 aaPredicted RBP12.09□□□□□ -0.47
TDP1-215ENST00000556498 RNF39Q9H2S5 420 aa12.01□□□□□ -0.49
TDP1-215ENST00000556498 APLP2Q06481 763 aa11.98□□□□□ -0.49
TDP1-215ENST00000556498 C1QBPQ07021 282 aaKnown RBP11.88□□□□□ -0.51
TDP1-215ENST00000556498 ZNF219Q9P2Y4 722 aaPredicted RBP11.87□□□□□ -0.51
TDP1-215ENST00000556498 SPINK5Q9NQ38 1064 aaPredicted RBP11.83□□□□□ -0.52
TDP1-215ENST00000556498 TRHP20396 242 aaPredicted RBP11.76□□□□□ -0.53
TDP1-215ENST00000556498 CAPN15O75808 1086 aa11.75□□□□□ -0.53
TDP1-215ENST00000556498 FKBP8Q14318 412 aa11.7□□□□□ -0.54
TDP1-215ENST00000556498 POLA2Q14181 598 aa11.66□□□□□ -0.54
TDP1-215ENST00000556498 MYT1Q01538 1121 aa11.65□□□□□ -0.54
TDP1-215ENST00000556498 MKRN4PQ13434 485 aaPredicted RBP11.58□□□□□ -0.56
TDP1-215ENST00000556498 ABCB7O75027 752 aa11.55□□□□□ -0.56
TDP1-215ENST00000556498 FBLN2P98095 1184 aa11.53□□□□□ -0.56
TDP1-215ENST00000556498 DSG3P32926 999 aa11.52□□□□□ -0.57
TDP1-215ENST00000556498 PELP1Q8IZL8 1130 aaKnown RBP11.5□□□□□ -0.57
TDP1-215ENST00000556498 CACNB1Q02641 598 aaPredicted RBP11.47□□□□□ -0.57
TDP1-215ENST00000556498 ZBTB12Q9Y330 459 aaPredicted RBP11.47□□□□□ -0.57
TDP1-215ENST00000556498 SPDYE4A6NLX3 237 aa11.43□□□□□ -0.58
TDP1-215ENST00000556498 TTBK1Q5TCY1 1321 aaPredicted RBP11.41□□□□□ -0.58
TDP1-215ENST00000556498 SLC24A1O60721 1099 aa11.34□□□□□ -0.59
TDP1-215ENST00000556498 PROM2Q8N271 834 aa11.32□□□□□ -0.6
TDP1-215ENST00000556498 FBXO3Q9UK99 471 aa11.23□□□□□ -0.61
TDP1-215ENST00000556498 OSCARQ8IYS5 282 aa11.22□□□□□ -0.61
TDP1-215ENST00000556498 SPDYE2BA6NHP3 402 aa11.2□□□□□ -0.62
TDP1-215ENST00000556498 SPDYE6P0CI01 402 aa11.2□□□□□ -0.62
TDP1-215ENST00000556498 SPDYE2Q495Y8 402 aa11.2□□□□□ -0.62
TDP1-215ENST00000556498 ZNF692Q9BU19 519 aaPredicted RBP11.19□□□□□ -0.62
TDP1-215ENST00000556498 AMER1Q5JTC6 1135 aaPredicted RBP11.15□□□□□ -0.62
TDP1-215ENST00000556498 RTN4Q9NQC3 1192 aaKnown RBP11.14□□□□□ -0.63
TDP1-215ENST00000556498 SSUH2Q9Y2M2 353 aa11.14□□□□□ -0.63
TDP1-215ENST00000556498 VASPP50552 380 aaPredicted RBP11.06□□□□□ -0.64
TDP1-215ENST00000556498 PABPN1Q86U42 306 aaKnown RBP eCLIP11.05□□□□□ -0.64
TDP1-215ENST00000556498 STAG3Q9UJ98 1225 aa10.96□□□□□ -0.65
TDP1-215ENST00000556498 IFNLR1Q8IU57 520 aaPredicted RBP10.95□□□□□ -0.66
TDP1-215ENST00000556498 RBM42Q9BTD8 480 aaKnown RBP10.94□□□□□ -0.66
TDP1-215ENST00000556498 AKT1S1Q96B36 256 aa10.89□□□□□ -0.67
TDP1-215ENST00000556498 ERICH6Q7L0X2 663 aa10.85□□□□□ -0.67
TDP1-215ENST00000556498 MIER1Q8N108 512 aa10.82□□□□□ -0.68
TDP1-215ENST00000556498 PLCD3Q8N3E9 789 aa10.82□□□□□ -0.68
TDP1-215ENST00000556498 KLHL34Q8N239 644 aa10.8□□□□□ -0.68
TDP1-215ENST00000556498 REM2Q8IYK8 340 aaPredicted RBP10.79□□□□□ -0.68
TDP1-215ENST00000556498 SPDYE1Q8NFV5 336 aaPredicted RBP10.79□□□□□ -0.68
TDP1-215ENST00000556498 SPOCK2Q92563 424 aa10.75□□□□□ -0.69
TDP1-215ENST00000556498 DAXXQ9UER7 740 aaPredicted RBP10.73□□□□□ -0.69
TDP1-215ENST00000556498 PLEKHG5O94827 1062 aa10.72□□□□□ -0.69
TDP1-215ENST00000556498 CLEC11AQ9Y240 323 aa10.71□□□□□ -0.69
TDP1-215ENST00000556498 PKD2Q13563 968 aa10.69□□□□□ -0.7
TDP1-215ENST00000556498 ZBTB47Q9UFB7 747 aaPredicted RBP10.69□□□□□ -0.7
TDP1-215ENST00000556498 PRR29P0C7W0 189 aa10.67□□□□□ -0.7
TDP1-215ENST00000556498 PITPNM1O00562 1244 aa10.64□□□□□ -0.71
TDP1-215ENST00000556498 CREBZFQ9NS37 354 aa10.61□□□□□ -0.71
TDP1-215ENST00000556498 MNX1P50219 401 aaPredicted RBP10.56□□□□□ -0.72
TDP1-215ENST00000556498 ECM2O94769 699 aaPredicted RBP10.54□□□□□ -0.72
TDP1-215ENST00000556498 NUBP1P53384 320 aa10.53□□□□□ -0.72
TDP1-215ENST00000556498 CIZ1Q9ULV3 898 aaPredicted RBP10.52□□□□□ -0.73
TDP1-215ENST00000556498 PRKCSHP14314 528 aaPredicted RBP10.5□□□□□ -0.73
TDP1-215ENST00000556498 DCAF8L2P0C7V8 631 aa10.49□□□□□ -0.73
TDP1-215ENST00000556498 GSE1Q14687 1217 aa10.47□□□□□ -0.73
TDP1-215ENST00000556498 TRIM41Q8WV44 630 aa10.45□□□□□ -0.74
TDP1-215ENST00000556498 RGL2O15211 777 aa10.44□□□□□ -0.74
TDP1-215ENST00000556498 NPM1P06748 294 aaKnown RBP eCLIP10.43□□□□□ -0.74
TDP1-215ENST00000556498 DCAF8Q5TAQ9 597 aa10.43□□□□□ -0.74
TDP1-215ENST00000556498 CHADLQ6NUI6 762 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms