RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	GRIP2	Q9C0E4	1043 aa		5.14	□□□□□ -1.59
PTCH1-223	ENST00000551623	WASL	O00401	505 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	ZMYND10	O75800	440 aa		5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	CLK2	P49760	499 aa	Known RBP	5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	RSPO4	Q2I0M5	234 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	SEPT12	Q8IYM1	358 aa		5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	BTBD6	Q96KE9	485 aa		5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	NLRP3	Q96P20	1036 aa		5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	GGA1	Q9UJY5	639 aa		5.13	□□□□□ -1.59
PTCH1-223	ENST00000551623	BMP4	P12644	408 aa		5.12	□□□□□ -1.59
PTCH1-223	ENST00000551623	TAS1R3	Q7RTX0	852 aa		5.12	□□□□□ -1.59
PTCH1-223	ENST00000551623	NBPF11	Q86T75	865 aa		5.12	□□□□□ -1.59
PTCH1-223	ENST00000551623	GOLGA2P5	Q9HBQ8	144 aa		5.12	□□□□□ -1.59
PTCH1-223	ENST00000551623	C2CD2L	O14523	706 aa		5.11	□□□□□ -1.59
PTCH1-223	ENST00000551623	EPX	P11678	715 aa		5.11	□□□□□ -1.59
PTCH1-223	ENST00000551623	UBAP2L	Q14157	1087 aa	Known RBP	5.11	□□□□□ -1.59
PTCH1-223	ENST00000551623	NKAPL	Q5M9Q1	402 aa		5.11	□□□□□ -1.59
PTCH1-223	ENST00000551623	GPAM	Q9HCL2	828 aa		5.11	□□□□□ -1.59
PTCH1-223	ENST00000551623	TRIM66	O15016	1216 aa		5.1	□□□□□ -1.59
PTCH1-223	ENST00000551623	CLN3	Q13286	438 aa		5.1	□□□□□ -1.59
PTCH1-223	ENST00000551623	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCH1-223	ENST00000551623	DYRK3	O43781	588 aa		5.09	□□□□□ -1.59
PTCH1-223	ENST00000551623	ERVK-9	P63128	1117 aa		5.09	□□□□□ -1.59
PTCH1-223	ENST00000551623	LBR	Q14739	615 aa	Known RBP	5.09	□□□□□ -1.59
PTCH1-223	ENST00000551623	CC2D2B	Q6DHV5	1058 aa		5.09	□□□□□ -1.59
PTCH1-223	ENST00000551623	RNF135	Q8IUD6	432 aa		5.09	□□□□□ -1.59
PTCH1-223	ENST00000551623	FGFR3	P22607	806 aa		5.08	□□□□□ -1.6
PTCH1-223	ENST00000551623	CHSY3	Q70JA7	882 aa		5.08	□□□□□ -1.6
PTCH1-223	ENST00000551623	PNMA1	Q8ND90	353 aa		5.08	□□□□□ -1.6
PTCH1-223	ENST00000551623	ABHD17A	Q96GS6	310 aa		5.08	□□□□□ -1.6
PTCH1-223	ENST00000551623	ZCCHC6	Q5VYS8	1495 aa	Known RBP	5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623		A0A1B0GTH6	734 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	NEURL1B	A8MQ27	555 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	SPATA31C1	P0DKV0	1188 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	ARAF	P10398	606 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	CTBS	Q01459	385 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	CYP2U1	Q7Z449	544 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	ARHGEF10L	Q9HCE6	1279 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	TPSG1	Q9NRR2	321 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	POLR3E	Q9NVU0	708 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	ERCC6	Q03468	1493 aa		5.07	□□□□□ -1.6
PTCH1-223	ENST00000551623	SCRIB	Q14160	1630 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	CSB-PGBD3	P0DP91	1061 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	PGBD3	Q8N328	593 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	EPS8L1	Q8TE68	723 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	TRIM11	Q96F44	468 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	RUBCNL	Q9H714	662 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	NDFIP2	Q9NV92	336 aa		5.06	□□□□□ -1.6
PTCH1-223	ENST00000551623	BNIP3L	O60238	219 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	GIGYF1	O75420	1035 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	PHKA2	P46019	1235 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	HAP1	P54257	671 aa	Predicted RBP	5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	LRP8	Q14114	963 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	EFHC2	Q5JST6	749 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	PRSS36	Q5K4E3	855 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	CCDC125	Q86Z20	511 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	ZC3H15	Q8WU90	426 aa	Known RBP	5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	PLVAP	Q9BX97	442 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	RSPH6A	Q9H0K4	717 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	NCAPD3	P42695	1498 aa		5.05	□□□□□ -1.6
PTCH1-223	ENST00000551623	SCTR	P47872	440 aa		5.04	□□□□□ -1.6
PTCH1-223	ENST00000551623	TRAK2	O60296	914 aa		5.03	□□□□□ -1.6
PTCH1-223	ENST00000551623	FBXO31	Q5XUX0	539 aa	Predicted RBP	5.03	□□□□□ -1.6
PTCH1-223	ENST00000551623	AK7	Q96M32	723 aa		5.03	□□□□□ -1.6
PTCH1-223	ENST00000551623	OSBPL3	Q9H4L5	887 aa		5.03	□□□□□ -1.6
PTCH1-223	ENST00000551623	THOC2	Q8NI27	1593 aa	Known RBP	5.03	□□□□□ -1.6
PTCH1-223	ENST00000551623	APBA3	O96018	575 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	ADH6	P28332	368 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	MSX1	P28360	303 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	CENPC	Q03188	943 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	CNKSR1	Q969H4	720 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	ESYT1	Q9BSJ8	1104 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	KRTAP4-7	Q9BYR0	210 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	HMX1	Q9NP08	348 aa	Predicted RBP	5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	RAB6B	Q9NRW1	208 aa		5.02	□□□□□ -1.61
PTCH1-223	ENST00000551623	HYAL3	O43820	417 aa	Predicted RBP	5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	IL2RA	P01589	272 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	PDE4D	Q08499	809 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	GNAS	Q5JWF2	1037 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	FCHSD1	Q86WN1	690 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	CRISPLD1	Q9H336	500 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	KLF15	Q9UIH9	416 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	PCDHB9	Q9Y5E1	797 aa		5.01	□□□□□ -1.61
PTCH1-223	ENST00000551623	SPDYE3	A6NKU9	549 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	AP1G2	O75843	785 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	GNRH1	P01148	92 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	GTF2E1	P29083	439 aa	Predicted RBP	5	□□□□□ -1.61
PTCH1-223	ENST00000551623	C4orf17	Q53FE4	359 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	PRRT3	Q5FWE3	981 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	RNF20	Q5VTR2	975 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	FIGNL1	Q6PIW4	674 aa		5	□□□□□ -1.61
PTCH1-223	ENST00000551623	AVEN	Q9NQS1	362 aa	Predicted RBP	5	□□□□□ -1.61
PTCH1-223	ENST00000551623	LCE1D	Q5T752	114 aa		4.99	□□□□□ -1.61
PTCH1-223	ENST00000551623	TMEM214	Q6NUQ4	689 aa	Known RBP	4.99	□□□□□ -1.61
PTCH1-223	ENST00000551623	FHDC1	Q9C0D6	1143 aa	Predicted RBP	4.99	□□□□□ -1.61
PTCH1-223	ENST00000551623	ESF1	Q9H501	851 aa	Known RBP	4.99	□□□□□ -1.61
PTCH1-223	ENST00000551623	DNAAF2	Q9NVR5	837 aa	Known RBP	4.99	□□□□□ -1.61
PTCH1-223	ENST00000551623	PCDHB11	Q9Y5F2	797 aa		4.99	□□□□□ -1.61

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