RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 CLN3Q13286 438 aa4.59□□□□□ -1.67
LIMA1-207ENST00000551486 DOC2BQ14184 412 aa4.59□□□□□ -1.67
LIMA1-207ENST00000551486 LBRQ14739 615 aaKnown RBP4.59□□□□□ -1.67
LIMA1-207ENST00000551486 RNF20Q5VTR2 975 aa4.59□□□□□ -1.67
LIMA1-207ENST00000551486 NBPF11Q86T75 865 aa4.59□□□□□ -1.67
LIMA1-207ENST00000551486 SUV39H2Q9H5I1 410 aa4.59□□□□□ -1.67
LIMA1-207ENST00000551486 PDE4DQ08499 809 aa4.58□□□□□ -1.68
LIMA1-207ENST00000551486 EFHC2Q5JST6 749 aa4.58□□□□□ -1.68
LIMA1-207ENST00000551486 SLCO4C1Q6ZQN7 724 aa4.58□□□□□ -1.68
LIMA1-207ENST00000551486 BTBD6Q96KE9 485 aa4.58□□□□□ -1.68
LIMA1-207ENST00000551486 GGA1Q9UJY5 639 aa4.58□□□□□ -1.68
LIMA1-207ENST00000551486 ATXN7L1Q9ULK2 861 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-207ENST00000551486 A0A1B0GTH6 734 aa4.57□□□□□ -1.68
LIMA1-207ENST00000551486 AP1G2O75843 785 aa4.57□□□□□ -1.68
LIMA1-207ENST00000551486 C1orf229Q6ZS94 237 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-207ENST00000551486 ZNF592Q92610 1267 aa4.57□□□□□ -1.68
LIMA1-207ENST00000551486 GPAMQ9HCL2 828 aa4.57□□□□□ -1.68
LIMA1-207ENST00000551486 ZFP64Q9NPA5 681 aa4.57□□□□□ -1.68
LIMA1-207ENST00000551486 GIGYF1O75420 1035 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-207ENST00000551486 CHRNA4P43681 627 aa4.56□□□□□ -1.68
LIMA1-207ENST00000551486 ERVK-9P63128 1117 aa4.56□□□□□ -1.68
LIMA1-207ENST00000551486 GNASQ5JWF2 1037 aa4.56□□□□□ -1.68
LIMA1-207ENST00000551486 PCDHB9Q9Y5E1 797 aa4.56□□□□□ -1.68
LIMA1-207ENST00000551486 SPDYE3A6NKU9 549 aa4.55□□□□□ -1.68
LIMA1-207ENST00000551486 EPXP11678 715 aa4.55□□□□□ -1.68
LIMA1-207ENST00000551486 FGFR3P22607 806 aa4.55□□□□□ -1.68
LIMA1-207ENST00000551486 MCCD1P59942 119 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-207ENST00000551486 SKIV2LQ15477 1246 aaKnown RBP4.55□□□□□ -1.68
LIMA1-207ENST00000551486 ZSCAN10Q96SZ4 725 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-207ENST00000551486 GNRH1P01148 92 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 SPATA31C1P0DKV0 1188 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 ARAFP10398 606 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 PHKA2P46019 1235 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 DGKGP49619 791 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 ARTNQ5T4W7 220 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 TMEM214Q6NUQ4 689 aaKnown RBP4.54□□□□□ -1.68
LIMA1-207ENST00000551486 FIGNL1Q6PIW4 674 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 RNF135Q8IUD6 432 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 KRTAP17-1Q9BYP8 105 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 KRTAP4-9Q9BYQ8 210 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 KRTAP4-2Q9BYR5 136 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 ARHGEF10LQ9HCE6 1279 aa4.54□□□□□ -1.68
LIMA1-207ENST00000551486 ZBBXA8MT70 800 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 APBA3O96018 575 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 HOXB4P17483 251 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-207ENST00000551486 ITGB7P26010 798 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 CENPCQ03188 943 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 PRRT3Q5FWE3 981 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 CHSY3Q70JA7 882 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 CNKSR1Q969H4 720 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 ABHD17AQ96GS6 310 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 ESYT1Q9BSJ8 1104 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 RUBCNLQ9H714 662 aa4.53□□□□□ -1.68
LIMA1-207ENST00000551486 ZNF330Q9Y3S2 320 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-207ENST00000551486 NEURL1BA8MQ27 555 aa4.52□□□□□ -1.69
LIMA1-207ENST00000551486 MYCP01106 439 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-207ENST00000551486 CTBSQ01459 385 aa4.52□□□□□ -1.69
LIMA1-207ENST00000551486 EPS8L1Q8TE68 723 aa4.52□□□□□ -1.69
LIMA1-207ENST00000551486 GOLGA2P5Q9HBQ8 144 aa4.52□□□□□ -1.69
LIMA1-207ENST00000551486 PCDHB11Q9Y5F2 797 aa4.52□□□□□ -1.69
LIMA1-207ENST00000551486 C2CD2LO14523 706 aa4.51□□□□□ -1.69
LIMA1-207ENST00000551486 USP17L8P0C7I0 530 aa4.51□□□□□ -1.69
LIMA1-207ENST00000551486 ADH6P28332 368 aa4.51□□□□□ -1.69
LIMA1-207ENST00000551486 MSX1P28360 303 aa4.51□□□□□ -1.69
LIMA1-207ENST00000551486 RSPO4Q2I0M5 234 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-207ENST00000551486 ESCO1Q5FWF5 840 aa4.51□□□□□ -1.69
LIMA1-207ENST00000551486 PLVAPQ9BX97 442 aa4.51□□□□□ -1.69
LIMA1-207ENST00000551486 BNIP3LO60238 219 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 THBS1P07996 1170 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 UBAP2LQ14157 1087 aaKnown RBP4.5□□□□□ -1.69
LIMA1-207ENST00000551486 SH3D19Q5HYK7 790 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 NACC1Q96RE7 527 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 OSBPL3Q9H4L5 887 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 AVENQ9NQS1 362 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-207ENST00000551486 RAB6BQ9NRW1 208 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 PCDHGC4Q9Y5F7 938 aa4.5□□□□□ -1.69
LIMA1-207ENST00000551486 DYRK3O43781 588 aa4.49□□□□□ -1.69
LIMA1-207ENST00000551486 TRAK2O60296 914 aa4.49□□□□□ -1.69
LIMA1-207ENST00000551486 ALAS2P22557 587 aa4.49□□□□□ -1.69
LIMA1-207ENST00000551486 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.49□□□□□ -1.69
LIMA1-207ENST00000551486 CRISPLD1Q9H336 500 aa4.49□□□□□ -1.69
LIMA1-207ENST00000551486 HMX1Q9NP08 348 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-207ENST00000551486 PRR12Q9ULL5 1215 aa4.49□□□□□ -1.69
LIMA1-207ENST00000551486 IL2RAP01589 272 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 SCTRP47872 440 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 C4orf17Q53FE4 359 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 NKAPLQ5M9Q1 402 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 TBC1D9Q6ZT07 1266 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 NLRP8Q86W28 1048 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 PROCA1Q8NCQ7 364 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-207ENST00000551486 RHBDD1Q8TEB9 315 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 XAGE2Q96GT9 111 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 TPSG1Q9NRR2 321 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 NDFIP2Q9NV92 336 aa4.48□□□□□ -1.69
LIMA1-207ENST00000551486 ATXN7O15265 892 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-207ENST00000551486 LRP8Q14114 963 aa4.47□□□□□ -1.69
LIMA1-207ENST00000551486 FAM182BQ5T319 152 aa4.47□□□□□ -1.69
LIMA1-207ENST00000551486 C1orf216Q8TAB5 229 aa4.47□□□□□ -1.69
LIMA1-207ENST00000551486 ZCCHC2Q9C0B9 1178 aaKnown RBP4.47□□□□□ -1.69
LIMA1-207ENST00000551486 FBXO45P0C2W1 286 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms