RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 ITGB4P16144 1822 aa16.87■□□□□ 0.29
PTCH1-222ENST00000551425 DPEP1P16444 411 aa16.87■□□□□ 0.29
PTCH1-222ENST00000551425 TMF1P82094 1093 aa16.86■□□□□ 0.29
PTCH1-222ENST00000551425 N4BP2Q86UW6 1770 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-222ENST00000551425 ATP6V1AP38606 617 aa16.85■□□□□ 0.29
PTCH1-222ENST00000551425 HSP90AB2PQ58FF8 381 aa16.85■□□□□ 0.29
PTCH1-222ENST00000551425 CCDC87Q9NVE4 849 aa16.85■□□□□ 0.29
PTCH1-222ENST00000551425 KCPQ6ZWJ8 1503 aa16.85■□□□□ 0.29
PTCH1-222ENST00000551425 PCNTO95613 3336 aa16.85■□□□□ 0.29
PTCH1-222ENST00000551425 KCNA3P22001 575 aa16.84■□□□□ 0.29
PTCH1-222ENST00000551425 SMC1BQ8NDV3 1235 aa16.84■□□□□ 0.29
PTCH1-222ENST00000551425 ASAP1Q9ULH1 1129 aa16.84■□□□□ 0.29
PTCH1-222ENST00000551425 KIF24Q5T7B8 1368 aa16.84■□□□□ 0.29
PTCH1-222ENST00000551425 FYB1O15117 783 aa16.83■□□□□ 0.28
PTCH1-222ENST00000551425 FLT4P35916 1363 aa16.83■□□□□ 0.28
PTCH1-222ENST00000551425 TRAPPC3LQ5T215 181 aa16.83■□□□□ 0.28
PTCH1-222ENST00000551425 PKD1L3Q7Z443 1732 aa16.83■□□□□ 0.28
PTCH1-222ENST00000551425 RRAGCQ9HB90 399 aa16.83■□□□□ 0.28
PTCH1-222ENST00000551425 TMOD3Q9NYL9 352 aa16.83■□□□□ 0.28
PTCH1-222ENST00000551425 RTCBQ9Y3I0 505 aaKnown RBP16.83■□□□□ 0.28
PTCH1-222ENST00000551425 NCAPD2Q15021 1401 aa16.82■□□□□ 0.28
PTCH1-222ENST00000551425 ADRA2BP18089 450 aa16.82■□□□□ 0.28
PTCH1-222ENST00000551425 NEUROD1Q13562 356 aa16.82■□□□□ 0.28
PTCH1-222ENST00000551425 DCAF5Q96JK2 942 aa16.82■□□□□ 0.28
PTCH1-222ENST00000551425 SPG7Q9UQ90 795 aa16.82■□□□□ 0.28
PTCH1-222ENST00000551425 HSPA1AP0DMV8 641 aaKnown RBP16.81■□□□□ 0.28
PTCH1-222ENST00000551425 HSPA1BP0DMV9 641 aaKnown RBP16.81■□□□□ 0.28
PTCH1-222ENST00000551425 GGNBP2Q9H3C7 697 aa16.81■□□□□ 0.28
PTCH1-222ENST00000551425 RNF181Q9P0P0 153 aa16.81■□□□□ 0.28
PTCH1-222ENST00000551425 PIM2Q9P1W9 311 aa16.81■□□□□ 0.28
PTCH1-222ENST00000551425 BRCA1P38398 1863 aaKnown RBP16.81■□□□□ 0.28
PTCH1-222ENST00000551425 C4AP0C0L4 1744 aa16.81■□□□□ 0.28
PTCH1-222ENST00000551425 GYS1P13807 737 aa16.8■□□□□ 0.28
PTCH1-222ENST00000551425 ARHGEF1Q92888 912 aaKnown RBP16.8■□□□□ 0.28
PTCH1-222ENST00000551425 TESK2Q96S53 571 aa16.8■□□□□ 0.28
PTCH1-222ENST00000551425 ATG3Q9NT62 314 aa16.8■□□□□ 0.28
PTCH1-222ENST00000551425 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTCH1-222ENST00000551425 PARP3Q9Y6F1 533 aa16.8■□□□□ 0.28
PTCH1-222ENST00000551425 ARFGEF1Q9Y6D6 1849 aa16.8■□□□□ 0.28
PTCH1-222ENST00000551425 KDRP35968 1356 aa16.79■□□□□ 0.28
PTCH1-222ENST00000551425 TNRC6CQ9HCJ0 1690 aaKnown RBP16.79■□□□□ 0.28
PTCH1-222ENST00000551425 DALRD3Q5D0E6 543 aaKnown RBP16.79■□□□□ 0.28
PTCH1-222ENST00000551425 RC3H1Q5TC82 1133 aaKnown RBP16.79■□□□□ 0.28
PTCH1-222ENST00000551425 SLC24A1O60721 1099 aa16.78■□□□□ 0.28
PTCH1-222ENST00000551425 ZC3H4Q9UPT8 1303 aaKnown RBP16.77■□□□□ 0.28
PTCH1-222ENST00000551425 RFC4P35249 363 aa16.77■□□□□ 0.28
PTCH1-222ENST00000551425 TONSLQ96HA7 1378 aa16.77■□□□□ 0.27
PTCH1-222ENST00000551425 CNTNAP4Q9C0A0 1308 aa16.76■□□□□ 0.27
PTCH1-222ENST00000551425 RPS6KA4O75676 772 aa16.76■□□□□ 0.27
PTCH1-222ENST00000551425 SLC4A9Q96Q91 983 aa16.76■□□□□ 0.27
PTCH1-222ENST00000551425 PHKG2P15735 406 aa16.75■□□□□ 0.27
PTCH1-222ENST00000551425 IFNL2Q8IZJ0 200 aa16.75■□□□□ 0.27
PTCH1-222ENST00000551425 ZNF831Q5JPB2 1677 aa16.75■□□□□ 0.27
PTCH1-222ENST00000551425 SLC34A2O95436 690 aa16.74■□□□□ 0.27
PTCH1-222ENST00000551425 KDM6AO15550 1401 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-222ENST00000551425 ST20-MTHFSA0A0A6YYL1 179 aa16.73■□□□□ 0.27
PTCH1-222ENST00000551425 VEGFAP15692 232 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-222ENST00000551425 GLTPD2A6NH11 291 aa16.72■□□□□ 0.27
PTCH1-222ENST00000551425 EMILIN1Q9Y6C2 1016 aa16.72■□□□□ 0.27
PTCH1-222ENST00000551425 EYA1Q99502 592 aa16.71■□□□□ 0.27
PTCH1-222ENST00000551425 RBM42Q9BTD8 480 aaKnown RBP16.71■□□□□ 0.27
PTCH1-222ENST00000551425 ERVV-2B6SEH9 535 aa16.7■□□□□ 0.26
PTCH1-222ENST00000551425 CHRNA5P30532 468 aa16.7■□□□□ 0.26
PTCH1-222ENST00000551425 DDR1Q08345 913 aa16.7■□□□□ 0.26
PTCH1-222ENST00000551425 COL5A3P25940 1745 aaPredicted RBP16.7■□□□□ 0.26
PTCH1-222ENST00000551425 WASHC2AQ641Q2 1341 aa16.7■□□□□ 0.26
PTCH1-222ENST00000551425 SBF1O95248 1867 aa16.69■□□□□ 0.26
PTCH1-222ENST00000551425 LMNB1P20700 586 aa16.69■□□□□ 0.26
PTCH1-222ENST00000551425 FKBP8Q14318 412 aa16.69■□□□□ 0.26
PTCH1-222ENST00000551425 USP42Q9H9J4 1324 aaKnown RBP16.69■□□□□ 0.26
PTCH1-222ENST00000551425 RASSF7Q02833 373 aa16.68■□□□□ 0.26
PTCH1-222ENST00000551425 SRP68Q9UHB9 627 aaKnown RBP16.67■□□□□ 0.26
PTCH1-222ENST00000551425 KIF20BQ96Q89 1820 aa16.66■□□□□ 0.26
PTCH1-222ENST00000551425 POLRMTO00411 1230 aaKnown RBP16.66■□□□□ 0.26
PTCH1-222ENST00000551425 PPM1GO15355 546 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-222ENST00000551425 POTECB2RU33 542 aa16.65■□□□□ 0.26
PTCH1-222ENST00000551425 HSP90AB1P08238 724 aaKnown RBP16.65■□□□□ 0.26
PTCH1-222ENST00000551425 TM4SF1P30408 202 aa16.65■□□□□ 0.26
PTCH1-222ENST00000551425 CRKLP46109 303 aaKnown RBP16.65■□□□□ 0.26
PTCH1-222ENST00000551425 CREBZFQ9NS37 354 aa16.65■□□□□ 0.26
PTCH1-222ENST00000551425 ANKRD26Q9UPS8 1709 aa16.65■□□□□ 0.26
PTCH1-222ENST00000551425 PRDM10Q9NQV6 1147 aa16.64■□□□□ 0.25
PTCH1-222ENST00000551425 MYH14Q7Z406 1995 aaKnown RBP16.64■□□□□ 0.25
PTCH1-222ENST00000551425 FOXN1O15353 648 aa16.62■□□□□ 0.25
PTCH1-222ENST00000551425 CARD14Q9BXL6 1004 aa16.62■□□□□ 0.25
PTCH1-222ENST00000551425 CABP4P57796 275 aa16.61■□□□□ 0.25
PTCH1-222ENST00000551425 MKRN1Q9UHC7 482 aaKnown RBP16.61■□□□□ 0.25
PTCH1-222ENST00000551425 PTCD1O75127 700 aaKnown RBP16.6■□□□□ 0.25
PTCH1-222ENST00000551425 DPY19L2Q6NUT2 758 aa16.6■□□□□ 0.25
PTCH1-222ENST00000551425 TTLL6Q8N841 843 aa16.6■□□□□ 0.25
PTCH1-222ENST00000551425 NFKBIEO00221 500 aa16.59■□□□□ 0.25
PTCH1-222ENST00000551425 EIF4A2Q14240 407 aaKnown RBP16.59■□□□□ 0.25
PTCH1-222ENST00000551425 CHADLQ6NUI6 762 aa16.59■□□□□ 0.25
PTCH1-222ENST00000551425 INTS5Q6P9B9 1019 aaKnown RBP16.59■□□□□ 0.25
PTCH1-222ENST00000551425 POLKQ9UBT6 870 aa16.59■□□□□ 0.25
PTCH1-222ENST00000551425 ZPR1O75312 459 aa16.58■□□□□ 0.24
PTCH1-222ENST00000551425 PLEKHO1Q53GL0 409 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-222ENST00000551425 CDCA8Q53HL2 280 aa16.58■□□□□ 0.24
PTCH1-222ENST00000551425 USPL1Q5W0Q7 1092 aa16.58■□□□□ 0.24
PTCH1-222ENST00000551425 CNTNAP1P78357 1384 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms