RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ITGB4P16144 1822 aa17.87■□□□□ 0.45
SCAF11-208ENST00000546534 SLC24A1O60721 1099 aa17.87■□□□□ 0.45
SCAF11-208ENST00000546534 APLP1P51693 650 aa17.87■□□□□ 0.45
SCAF11-208ENST00000546534 NKX1-1Q15270 411 aaPredicted RBP17.87■□□□□ 0.45
SCAF11-208ENST00000546534 TONSLQ96HA7 1378 aa17.87■□□□□ 0.45
SCAF11-208ENST00000546534 GNPATO15228 680 aa17.86■□□□□ 0.45
SCAF11-208ENST00000546534 KIF24Q5T7B8 1368 aa17.86■□□□□ 0.45
SCAF11-208ENST00000546534 CICQ96RK0 1608 aaPredicted RBP17.86■□□□□ 0.45
SCAF11-208ENST00000546534 MMP10P09238 476 aa17.85■□□□□ 0.45
SCAF11-208ENST00000546534 ITPK1Q13572 414 aa17.85■□□□□ 0.45
SCAF11-208ENST00000546534 MAP2P11137 1827 aaKnown RBP17.84■□□□□ 0.45
SCAF11-208ENST00000546534 TOMM70O94826 608 aa17.84■□□□□ 0.45
SCAF11-208ENST00000546534 DNAJC5GQ8N7S2 189 aa17.84■□□□□ 0.45
SCAF11-208ENST00000546534 ASAP1Q9ULH1 1129 aa17.84■□□□□ 0.45
SCAF11-208ENST00000546534 SPG7Q9UQ90 795 aa17.84■□□□□ 0.45
SCAF11-208ENST00000546534 EMILIN1Q9Y6C2 1016 aa17.84■□□□□ 0.45
SCAF11-208ENST00000546534 PKD1L3Q7Z443 1732 aa17.84■□□□□ 0.45
SCAF11-208ENST00000546534 PXDNLA1KZ92 1463 aa17.83■□□□□ 0.45
SCAF11-208ENST00000546534 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
SCAF11-208ENST00000546534 NCAPD2Q15021 1401 aa17.82■□□□□ 0.44
SCAF11-208ENST00000546534 ATP6V1AP38606 617 aa17.82■□□□□ 0.44
SCAF11-208ENST00000546534 BCS1LQ9Y276 419 aa17.82■□□□□ 0.44
SCAF11-208ENST00000546534 A0A0G2JLW4 131 aa17.81■□□□□ 0.44
SCAF11-208ENST00000546534 TGFB2P61812 414 aa17.81■□□□□ 0.44
SCAF11-208ENST00000546534 NMRK2Q9NPI5 230 aa17.81■□□□□ 0.44
SCAF11-208ENST00000546534 TMF1P82094 1093 aa17.8■□□□□ 0.44
SCAF11-208ENST00000546534 ARHGAP27Q6ZUM4 889 aa17.8■□□□□ 0.44
SCAF11-208ENST00000546534 PPM1GO15355 546 aaPredicted RBP17.79■□□□□ 0.44
SCAF11-208ENST00000546534 ATG3Q9NT62 314 aa17.79■□□□□ 0.44
SCAF11-208ENST00000546534 KIAA1551Q9HCM1 1747 aa17.78■□□□□ 0.44
SCAF11-208ENST00000546534 PHKG2P15735 406 aa17.78■□□□□ 0.44
SCAF11-208ENST00000546534 NLGN1Q8N2Q7 840 aa17.78■□□□□ 0.44
SCAF11-208ENST00000546534 EYA1Q99502 592 aa17.78■□□□□ 0.44
SCAF11-208ENST00000546534 CARD14Q9BXL6 1004 aa17.78■□□□□ 0.44
SCAF11-208ENST00000546534 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.78■□□□□ 0.441e-10■■□□□ 12.3
SCAF11-208ENST00000546534 KIF20BQ96Q89 1820 aa17.77■□□□□ 0.44
SCAF11-208ENST00000546534 KIF13BQ9NQT8 1826 aa17.77■□□□□ 0.44
SCAF11-208ENST00000546534 N4BP2Q86UW6 1770 aaPredicted RBP17.77■□□□□ 0.44
SCAF11-208ENST00000546534 DPEP1P16444 411 aa17.77■□□□□ 0.44
SCAF11-208ENST00000546534 TRAPPC3LQ5T215 181 aa17.77■□□□□ 0.44
SCAF11-208ENST00000546534 IFNL2Q8IZJ0 200 aa17.77■□□□□ 0.44
SCAF11-208ENST00000546534 ZBTB12Q9Y330 459 aaPredicted RBP17.77■□□□□ 0.44
SCAF11-208ENST00000546534 RTCBQ9Y3I0 505 aaKnown RBP17.77■□□□□ 0.44
SCAF11-208ENST00000546534 C10orf71Q711Q0 1435 aa17.77■□□□□ 0.44
SCAF11-208ENST00000546534 FCHSD2O94868 740 aa17.76■□□□□ 0.43
SCAF11-208ENST00000546534 ARHGEF1Q92888 912 aaKnown RBP17.76■□□□□ 0.43
SCAF11-208ENST00000546534 WASHC2AQ641Q2 1341 aa17.75■□□□□ 0.43
SCAF11-208ENST00000546534 SLC4A9Q96Q91 983 aa17.75■□□□□ 0.43
SCAF11-208ENST00000546534 CCDC87Q9NVE4 849 aa17.75■□□□□ 0.43
SCAF11-208ENST00000546534 KDRP35968 1356 aa17.75■□□□□ 0.43
SCAF11-208ENST00000546534 GYS1P13807 737 aa17.74■□□□□ 0.43
SCAF11-208ENST00000546534 HTRA3P83110 453 aa17.74■□□□□ 0.43
SCAF11-208ENST00000546534 C9orf131Q5VYM1 1079 aa17.74■□□□□ 0.43
SCAF11-208ENST00000546534 RBM46Q8TBY0 533 aaKnown RBP17.74■□□□□ 0.43
SCAF11-208ENST00000546534 RBM42Q9BTD8 480 aaKnown RBP17.73■□□□□ 0.43
SCAF11-208ENST00000546534 KCNA3P22001 575 aa17.72■□□□□ 0.43
SCAF11-208ENST00000546534 CDCA8Q53HL2 280 aa17.72■□□□□ 0.43
SCAF11-208ENST00000546534 RC3H1Q5TC82 1133 aaKnown RBP17.72■□□□□ 0.43
SCAF11-208ENST00000546534 PARP3Q9Y6F1 533 aa17.72■□□□□ 0.43
SCAF11-208ENST00000546534 RPS6KA4O75676 772 aa17.71■□□□□ 0.43
SCAF11-208ENST00000546534 RFC4P35249 363 aa17.71■□□□□ 0.43
SCAF11-208ENST00000546534 C16orf71Q8IYS4 520 aaPredicted RBP17.71■□□□□ 0.43
SCAF11-208ENST00000546534 KLRG1Q96E93 195 aa17.71■□□□□ 0.43
SCAF11-208ENST00000546534 C4AP0C0L4 1744 aa17.71■□□□□ 0.43
SCAF11-208ENST00000546534 WDR90Q96KV7 1748 aa17.7■□□□□ 0.42
SCAF11-208ENST00000546534 MKRN4PQ13434 485 aaPredicted RBP17.7■□□□□ 0.42
SCAF11-208ENST00000546534 COL13A1Q5TAT6 717 aaPredicted RBP17.7■□□□□ 0.42
SCAF11-208ENST00000546534 POTEHQ6S545 545 aa17.7■□□□□ 0.42
SCAF11-208ENST00000546534 JMYQ8N9B5 988 aa17.7■□□□□ 0.42
SCAF11-208ENST00000546534 POLKQ9UBT6 870 aa17.7■□□□□ 0.42
SCAF11-208ENST00000546534 CNTNAP4Q9C0A0 1308 aa17.7■□□□□ 0.42
SCAF11-208ENST00000546534 ANKRD26Q9UPS8 1709 aa17.69■□□□□ 0.42
SCAF11-208ENST00000546534 ERVV-2B6SEH9 535 aa17.69■□□□□ 0.42
SCAF11-208ENST00000546534 FSTL1Q12841 308 aa17.69■□□□□ 0.42
SCAF11-208ENST00000546534 PIM2Q9P1W9 311 aa17.69■□□□□ 0.42
SCAF11-208ENST00000546534 PLEKHG2Q9H7P9 1386 aa17.68■□□□□ 0.42
SCAF11-208ENST00000546534 EIF4A2Q14240 407 aaKnown RBP17.68■□□□□ 0.42
SCAF11-208ENST00000546534 KCPQ6ZWJ8 1503 aa17.67■□□□□ 0.42
SCAF11-208ENST00000546534 DCAF5Q96JK2 942 aa17.67■□□□□ 0.42
SCAF11-208ENST00000546534 RNF181Q9P0P0 153 aa17.67■□□□□ 0.42
SCAF11-208ENST00000546534 ZNF831Q5JPB2 1677 aa17.67■□□□□ 0.42
SCAF11-208ENST00000546534 KDM2BQ8NHM5 1336 aa17.67■□□□□ 0.42
SCAF11-208ENST00000546534 BRCA1P38398 1863 aaKnown RBP17.67■□□□□ 0.42
SCAF11-208ENST00000546534 DALRD3Q5D0E6 543 aaKnown RBP17.66■□□□□ 0.42
SCAF11-208ENST00000546534 RRAGCQ9HB90 399 aa17.66■□□□□ 0.42
SCAF11-208ENST00000546534 SRP68Q9UHB9 627 aaKnown RBP17.66■□□□□ 0.42
SCAF11-208ENST00000546534 COL5A3P25940 1745 aaPredicted RBP17.65■□□□□ 0.42
SCAF11-208ENST00000546534 PTCD1O75127 700 aaKnown RBP17.64■□□□□ 0.41
SCAF11-208ENST00000546534 HSP90AB1P08238 724 aaKnown RBP17.64■□□□□ 0.41
SCAF11-208ENST00000546534 CRKLP46109 303 aaKnown RBP17.64■□□□□ 0.41
SCAF11-208ENST00000546534 CABP4P57796 275 aa17.64■□□□□ 0.41
SCAF11-208ENST00000546534 DDR1Q08345 913 aa17.64■□□□□ 0.41
SCAF11-208ENST00000546534 FKBP8Q14318 412 aa17.64■□□□□ 0.41
SCAF11-208ENST00000546534 ARFGEF1Q9Y6D6 1849 aa17.63■□□□□ 0.41
SCAF11-208ENST00000546534 CHRNA5P30532 468 aa17.63■□□□□ 0.41
SCAF11-208ENST00000546534 TNNT2P45379 298 aaPredicted RBP17.63■□□□□ 0.41
SCAF11-208ENST00000546534 KDM6AO15550 1401 aaPredicted RBP17.63■□□□□ 0.41
SCAF11-208ENST00000546534 PLEKHO1Q53GL0 409 aaPredicted RBP17.62■□□□□ 0.41
SCAF11-208ENST00000546534 ZNF530Q6P9A1 599 aaPredicted RBP17.62■□□□□ 0.41
SCAF11-208ENST00000546534 USP42Q9H9J4 1324 aaKnown RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms