RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 DPEP1P16444 411 aa13.24□□□□□ -0.29
CHD4-212ENST00000545083 ATP6V1AP38606 617 aa13.24□□□□□ -0.29
CHD4-212ENST00000545083 TGFB2P61812 414 aa13.24□□□□□ -0.29
CHD4-212ENST00000545083 RBM46Q8TBY0 533 aaKnown RBP13.24□□□□□ -0.29
CHD4-212ENST00000545083 ST20-MTHFSA0A0A6YYL1 179 aa13.23□□□□□ -0.29
CHD4-212ENST00000545083 FCHSD2O94868 740 aa13.23□□□□□ -0.29
CHD4-212ENST00000545083 C9orf131Q5VYM1 1079 aa13.23□□□□□ -0.29
CHD4-212ENST00000545083 NCAPD2Q15021 1401 aa13.22□□□□□ -0.29
CHD4-212ENST00000545083 SLC4A9Q96Q91 983 aa13.22□□□□□ -0.29
CHD4-212ENST00000545083 TMOD3Q9NYL9 352 aa13.22□□□□□ -0.29
CHD4-212ENST00000545083 EMILIN1Q9Y6C2 1016 aa13.22□□□□□ -0.29
CHD4-212ENST00000545083 KCNA3P22001 575 aa13.21□□□□□ -0.29
CHD4-212ENST00000545083 ATG3Q9NT62 314 aa13.21□□□□□ -0.29
CHD4-212ENST00000545083 KDRP35968 1356 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 KIF24Q5T7B8 1368 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 KCPQ6ZWJ8 1503 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 TMF1P82094 1093 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 FSTL1Q12841 308 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 C16orf71Q8IYS4 520 aaPredicted RBP13.2□□□□□ -0.3
CHD4-212ENST00000545083 TNS4Q8IZW8 715 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 NLGN1Q8N2Q7 840 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 ARHGEF1Q92888 912 aaKnown RBP13.2□□□□□ -0.3
CHD4-212ENST00000545083 SPG7Q9UQ90 795 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 PLEKHG2Q9H7P9 1386 aa13.2□□□□□ -0.3
CHD4-212ENST00000545083 GYS1P13807 737 aa13.19□□□□□ -0.3
CHD4-212ENST00000545083 TRAPPC3LQ5T215 181 aa13.19□□□□□ -0.3
CHD4-212ENST00000545083 CCDC87Q9NVE4 849 aa13.19□□□□□ -0.3
CHD4-212ENST00000545083 RTCBQ9Y3I0 505 aaKnown RBP13.19□□□□□ -0.3
CHD4-212ENST00000545083 C4AP0C0L4 1744 aa13.19□□□□□ -0.3
CHD4-212ENST00000545083 BRCA1P38398 1863 aaKnown RBP13.19□□□□□ -0.3
CHD4-212ENST00000545083 PHKG2P15735 406 aa13.18□□□□□ -0.3
CHD4-212ENST00000545083 PRELPP51888 382 aa13.18□□□□□ -0.3
CHD4-212ENST00000545083 EYA1Q99502 592 aa13.18□□□□□ -0.3
CHD4-212ENST00000545083 RRAGCQ9HB90 399 aa13.18□□□□□ -0.3
CHD4-212ENST00000545083 DCAF5Q96JK2 942 aa13.17□□□□□ -0.3
CHD4-212ENST00000545083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.17□□□□□ -0.31e-8■■■□□ 16.6
CHD4-212ENST00000545083 RNF181Q9P0P0 153 aa13.17□□□□□ -0.3
CHD4-212ENST00000545083 PARP3Q9Y6F1 533 aa13.17□□□□□ -0.3
CHD4-212ENST00000545083 TONSLQ96HA7 1378 aa13.17□□□□□ -0.3
CHD4-212ENST00000545083 IFNL2Q8IZJ0 200 aa13.16□□□□□ -0.3
CHD4-212ENST00000545083 KIF20BQ96Q89 1820 aa13.16□□□□□ -0.3
CHD4-212ENST00000545083 KDM2BQ8NHM5 1336 aa13.15□□□□□ -0.3
CHD4-212ENST00000545083 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
CHD4-212ENST00000545083 RPS6KA4O75676 772 aa13.15□□□□□ -0.3
CHD4-212ENST00000545083 ADRA2BP18089 450 aa13.15□□□□□ -0.3
CHD4-212ENST00000545083 DALRD3Q5D0E6 543 aaKnown RBP13.15□□□□□ -0.3
CHD4-212ENST00000545083 RC3H1Q5TC82 1133 aaKnown RBP13.15□□□□□ -0.3
CHD4-212ENST00000545083 RBM42Q9BTD8 480 aaKnown RBP13.15□□□□□ -0.3
CHD4-212ENST00000545083 CARD14Q9BXL6 1004 aa13.15□□□□□ -0.3
CHD4-212ENST00000545083 PIM2Q9P1W9 311 aa13.15□□□□□ -0.3
CHD4-212ENST00000545083 ARFGEF1Q9Y6D6 1849 aa13.15□□□□□ -0.3
CHD4-212ENST00000545083 CNTNAP4Q9C0A0 1308 aa13.14□□□□□ -0.31
CHD4-212ENST00000545083 RFC4P35249 363 aa13.14□□□□□ -0.31
CHD4-212ENST00000545083 DDR1Q08345 913 aa13.14□□□□□ -0.31
CHD4-212ENST00000545083 SRP68Q9UHB9 627 aaKnown RBP13.14□□□□□ -0.31
CHD4-212ENST00000545083 WASHC2AQ641Q2 1341 aa13.13□□□□□ -0.31
CHD4-212ENST00000545083 CHRNA5P30532 468 aa13.13□□□□□ -0.31
CHD4-212ENST00000545083 SMC1BQ8NDV3 1235 aa13.13□□□□□ -0.31
CHD4-212ENST00000545083 COL5A3P25940 1745 aaPredicted RBP13.13□□□□□ -0.31
CHD4-212ENST00000545083 MYH14Q7Z406 1995 aaKnown RBP13.12□□□□□ -0.31
CHD4-212ENST00000545083 SLC24A1O60721 1099 aa13.12□□□□□ -0.31
CHD4-212ENST00000545083 HSPA1AP0DMV8 641 aaKnown RBP13.12□□□□□ -0.31
CHD4-212ENST00000545083 HSPA1BP0DMV9 641 aaKnown RBP13.12□□□□□ -0.31
CHD4-212ENST00000545083 FKBP8Q14318 412 aa13.12□□□□□ -0.31
CHD4-212ENST00000545083 ANKRD26Q9UPS8 1709 aa13.12□□□□□ -0.31
CHD4-212ENST00000545083 ZNF831Q5JPB2 1677 aa13.12□□□□□ -0.31
CHD4-212ENST00000545083 RASSF7Q02833 373 aa13.11□□□□□ -0.31
CHD4-212ENST00000545083 TNRC6CQ9HCJ0 1690 aaKnown RBP13.11□□□□□ -0.31
CHD4-212ENST00000545083 ERVV-2B6SEH9 535 aa13.1□□□□□ -0.31
CHD4-212ENST00000545083 CRKLP46109 303 aaKnown RBP13.1□□□□□ -0.31
CHD4-212ENST00000545083 POLKQ9UBT6 870 aa13.1□□□□□ -0.31
CHD4-212ENST00000545083 KDM6AO15550 1401 aaPredicted RBP13.1□□□□□ -0.31
CHD4-212ENST00000545083 SBF1O95248 1867 aa13.09□□□□□ -0.31
CHD4-212ENST00000545083 EIF4A2Q14240 407 aaKnown RBP13.09□□□□□ -0.31
CHD4-212ENST00000545083 USP42Q9H9J4 1324 aaKnown RBP13.09□□□□□ -0.31
CHD4-212ENST00000545083 POLRMTO00411 1230 aaKnown RBP13.08□□□□□ -0.32
CHD4-212ENST00000545083 PTCD1O75127 700 aaKnown RBP13.08□□□□□ -0.32
CHD4-212ENST00000545083 TM4SF1P30408 202 aa13.07□□□□□ -0.32
CHD4-212ENST00000545083 GLTPD2A6NH11 291 aa13.06□□□□□ -0.32
CHD4-212ENST00000545083 POTECB2RU33 542 aa13.06□□□□□ -0.32
CHD4-212ENST00000545083 VEGFAP15692 232 aaPredicted RBP13.06□□□□□ -0.32
CHD4-212ENST00000545083 CABP4P57796 275 aa13.06□□□□□ -0.32
CHD4-212ENST00000545083 ZC3H4Q9UPT8 1303 aaKnown RBP13.06□□□□□ -0.32
CHD4-212ENST00000545083 ADAMTS7Q9UKP4 1686 aa13.05□□□□□ -0.32
CHD4-212ENST00000545083 HSP90AB1P08238 724 aaKnown RBP13.05□□□□□ -0.32
CHD4-212ENST00000545083 ZNF530Q6P9A1 599 aaPredicted RBP13.05□□□□□ -0.32
CHD4-212ENST00000545083 INTS5Q6P9B9 1019 aaKnown RBP13.05□□□□□ -0.32
CHD4-212ENST00000545083 LMNB1P20700 586 aa13.04□□□□□ -0.32
CHD4-212ENST00000545083 TJP1Q07157 1748 aa13.04□□□□□ -0.32
CHD4-212ENST00000545083 NFKBIEO00221 500 aa13.03□□□□□ -0.32
CHD4-212ENST00000545083 TNNT2P45379 298 aaPredicted RBP13.03□□□□□ -0.32
CHD4-212ENST00000545083 PLEKHO1Q53GL0 409 aaPredicted RBP13.03□□□□□ -0.32
CHD4-212ENST00000545083 CDCA8Q53HL2 280 aa13.03□□□□□ -0.32
CHD4-212ENST00000545083 USPL1Q5W0Q7 1092 aa13.03□□□□□ -0.32
CHD4-212ENST00000545083 NFATC2IPQ8NCF5 419 aa13.03□□□□□ -0.32
CHD4-212ENST00000545083 MTHFSP49914 203 aa13.02□□□□□ -0.33
CHD4-212ENST00000545083 NFIXQ14938 502 aa13.02□□□□□ -0.33
CHD4-212ENST00000545083 AEBP1Q8IUX7 1158 aa13.02□□□□□ -0.33
CHD4-212ENST00000545083 DNAJC10Q8IXB1 793 aa13.01□□□□□ -0.33
CHD4-212ENST00000545083 BCL2L12Q9HB09 334 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms